RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ITIH3Q06033 890 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 ADIGQ0VDE8 80 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 MAMLD1Q13495 774 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 PTPROQ16827 1216 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 LONRF2Q1L5Z9 754 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 USP41Q3LFD5 358 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 SLC39A12Q504Y0 691 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 C2CD6Q53TS8 623 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 FAM171A1Q5VUB5 890 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 FAM183BPQ6ZVS7 135 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 SND1Q7KZF4 910 aaKnown RBP eCLIP6.5□□□□□ -1.37
LIG3-206ENST00000586058 LIMS2Q7Z4I7 341 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 RTN4RL1Q86UN2 441 aaPredicted RBP6.5□□□□□ -1.37
LIG3-206ENST00000586058 OSTM1Q86WC4 334 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 XYLT1Q86Y38 959 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 DNAAF5Q86Y56 855 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 ZNF280BQ86YH2 543 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 C7orf61Q8IZ16 206 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 NIPA2Q8N8Q9 360 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 CCDC26Q8TAB7 109 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 OLIG1Q8TAK6 271 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 SPPL2BQ8TCT7 592 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 ACTRT1Q8TDG2 376 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.5□□□□□ -1.37
LIG3-206ENST00000586058 C2orf15Q8WU43 125 aaKnown RBP6.5□□□□□ -1.37
LIG3-206ENST00000586058 RUBCNQ92622 972 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 RABGGTAQ92696 567 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 PCED1BQ96HM7 432 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 FUBP3Q96I24 572 aaKnown RBP eCLIP6.5□□□□□ -1.37
LIG3-206ENST00000586058 RNPC3Q96LT9 517 aaKnown RBP6.5□□□□□ -1.37
LIG3-206ENST00000586058 CASD1Q96PB1 797 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 SLC9A7Q96T83 725 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.5□□□□□ -1.37
LIG3-206ENST00000586058 PAAF1Q9BRP4 392 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 TTPALQ9BTX7 342 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 OSBPL7Q9BZF2 842 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 NRDE2Q9H7Z3 1164 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 PNPLA8Q9NP80 782 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 HOMER3Q9NSC5 361 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 TMEM51Q9NW97 253 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 ABI2Q9NYB9 513 aaPredicted RBP6.5□□□□□ -1.37
LIG3-206ENST00000586058 RRN3Q9NYV6 651 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 CACNG4Q9UBN1 327 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 DNAJB4Q9UDY4 337 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 SALL4Q9UJQ4 1053 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 COG5Q9UP83 839 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 PCDHB5Q9Y5E4 795 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 PCDHB12Q9Y5F1 795 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 TIMM13Q9Y5L4 95 aaPredicted RBP6.5□□□□□ -1.37
LIG3-206ENST00000586058 MIA3Q5JRA6 1907 aa6.5□□□□□ -1.37
LIG3-206ENST00000586058 ANAPC1Q9H1A4 1944 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.49□□□□□ -1.37
LIG3-206ENST00000586058 TMEM191CA6NGB0 347 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 SRGAP2O75044 1071 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 DAB1O75553 588 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 DGKIO75912 1065 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 GLI1P08151 1106 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 CFHP08603 1231 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 PDGFRAP16234 1089 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 TKTP29401 623 aaKnown RBP6.49□□□□□ -1.37
LIG3-206ENST00000586058 SLC11A1P49279 550 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 GLUD2P49448 558 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 SULT1E1P49888 294 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 AFF1P51825 1210 aaKnown RBP6.49□□□□□ -1.37
LIG3-206ENST00000586058 TKTL1P51854 596 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 ARPP19P56211 112 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 RNASE9P60153 205 aaKnown RBP6.49□□□□□ -1.37
LIG3-206ENST00000586058 RPL10AP62906 217 aaKnown RBP6.49□□□□□ -1.37
LIG3-206ENST00000586058 KRT81Q14533 505 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 TAF12Q16514 161 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 CDO1Q16878 200 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 ARL13BQ3SXY8 428 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 GLE1Q53GS7 698 aaKnown RBP6.49□□□□□ -1.37
LIG3-206ENST00000586058 LRRC38Q5VT99 294 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 FAM117BQ6P1L5 589 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 CC2D1AQ6P1N0 951 aaPredicted RBP6.49□□□□□ -1.37
LIG3-206ENST00000586058 VSTM1Q6UX27 236 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 CLEC20AQ6ZU45 233 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 SLC26A9Q7LBE3 791 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 POLNQ7Z5Q5 900 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 PHLDB2Q86SQ0 1253 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 PIGZQ86VD9 579 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 TTC30AQ86WT1 665 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 MAP7D3Q8IWC1 876 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 SCN4BQ8IWT1 228 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 ARHGAP18Q8N392 663 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 TMEM130Q8N3G9 435 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 FIBCD1Q8N539 461 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 GPR161Q8N6U8 529 aaKnown RBP6.49□□□□□ -1.37
LIG3-206ENST00000586058 EXD1Q8NHP7 514 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 GRK7Q8WTQ7 553 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 KCTD13Q8WZ19 329 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 TOP1MTQ969P6 601 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 MCRS1Q96EZ8 462 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 BTBD6Q96KE9 485 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 CNPY3Q9BT09 278 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 GOLPH3Q9H4A6 298 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 FBXO44Q9H4M3 255 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 ABCB6Q9NP58 842 aa6.49□□□□□ -1.37
LIG3-206ENST00000586058 NGRNQ9NPE2 291 aaKnown RBP6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms