RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PAPSS1O43252 624 aaPredicted RBP16.06■□□□□ 0.16
SS18-215ENST00000580642 BUB1BO60566 1050 aaPredicted RBP16.06■□□□□ 0.16
SS18-215ENST00000580642 HSF2BPO75031 334 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 PALMO75781 387 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 HAPLN1P10915 354 aaPredicted RBP16.06■□□□□ 0.16
SS18-215ENST00000580642 ATF2P15336 505 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 OR1D2P34982 312 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 GRIK1P39086 918 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 MRPS5P82675 430 aaKnown RBP16.06■□□□□ 0.16
SS18-215ENST00000580642 OR6B2Q6IFH4 312 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 PRSS55Q6UWB4 352 aaPredicted RBP16.06■□□□□ 0.16
SS18-215ENST00000580642 RSPO2Q6UXX9 243 aaPredicted RBP16.06■□□□□ 0.16
SS18-215ENST00000580642 SYT10Q6XYQ8 523 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 DAAM2Q86T65 1068 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 DNAAF5Q86Y56 855 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 SLC35F6Q8N357 371 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 B3GALT6Q96L58 329 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 NAPGQ99747 312 aaPredicted RBP16.06■□□□□ 0.16
SS18-215ENST00000580642 IRX2Q9BZI1 471 aaPredicted RBP16.06■□□□□ 0.16
SS18-215ENST00000580642 FBXO44Q9H4M3 255 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 ABI2Q9NYB9 513 aaPredicted RBP16.06■□□□□ 0.16
SS18-215ENST00000580642 IL37Q9NZH6 218 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 DNAI1Q9UI46 699 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 MSRAQ9UJ68 235 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 ANAPC7Q9UJX3 599 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 TMEM59LQ9UK28 342 aa16.06■□□□□ 0.16
SS18-215ENST00000580642 H0YGN5 161 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 DPYSL4O14531 572 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 TNFRSF10BO14763 440 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 BEST1O76090 585 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 PROSCO94903 275 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 RTN3O95197 1032 aaPredicted RBP16.05■□□□□ 0.16
SS18-215ENST00000580642 CYP2F1P24903 491 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 RGS7P49802 495 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 SMC1AQ14683 1233 aaKnown RBP16.05■□□□□ 0.16
SS18-215ENST00000580642 FAM102AQ5T9C2 384 aaPredicted RBP16.05■□□□□ 0.16
SS18-215ENST00000580642 CYP4A22Q5TCH4 519 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 FAM183BPQ6ZVS7 135 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 SCUBE3Q8IX30 993 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 ARHGAP18Q8N392 663 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 SPPL3Q8TCT6 385 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 WDR24Q96S15 920 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 KCNK16Q96T55 309 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 LMAN2LQ9H0V9 348 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 RRN3Q9NYV6 651 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 VWA8A3KMH1 1905 aa16.05■□□□□ 0.16
SS18-215ENST00000580642 FAM92AA1XBS5 289 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 WDR27A2RRH5 827 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 F8VP50 259 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 CES2O00748 559 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 ATMINO43313 823 aaPredicted RBP16.04■□□□□ 0.16
SS18-215ENST00000580642 LPXNO60711 386 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 GABBR2O75899 941 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 ZBED1O96006 694 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 ADH1AP07327 375 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 OR4Q2P0C623 313 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 TKTL1P51854 596 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 ZNF143P52747 638 aaPredicted RBP16.04■□□□□ 0.16
SS18-215ENST00000580642 RABGGTBP53611 331 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 ADCY1Q08828 1119 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 ADIGQ0VDE8 80 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 PLD1Q13393 1074 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 CCDC142Q17RM4 750 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 DNTTIP2Q5QJE6 756 aaKnown RBP16.04■□□□□ 0.16
SS18-215ENST00000580642 MEI1Q5TIA1 1274 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 LRRC38Q5VT99 294 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 PAPD7Q5XG87 772 aaKnown RBP16.04■□□□□ 0.16
SS18-215ENST00000580642 RNF19BQ6ZMZ0 732 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 TMC7Q7Z402 723 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 PEX26Q7Z412 305 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 TCEAL8Q8IYN2 117 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 NUP93Q8N1F7 819 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 MRPL43Q8N983 215 aaKnown RBP16.04■□□□□ 0.16
SS18-215ENST00000580642 ATAD1Q8NBU5 361 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 GOLGA1Q92805 767 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 CNPY3Q9BT09 278 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 TLR9Q9NR96 1032 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 AMFRQ9UKV5 643 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 ALG6Q9Y672 507 aa16.04■□□□□ 0.16
SS18-215ENST00000580642 C2CD4BA6NLJ0 364 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 H3BNC9 293 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 FSCN2O14926 492 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 CXCL14O95715 111 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 CA3P07451 260 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 LCP1P13796 627 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 TCP1P17987 556 aaKnown RBP16.03■□□□□ 0.16
SS18-215ENST00000580642 ELF1P32519 619 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 RFC1P35251 1148 aaPredicted RBP16.03■□□□□ 0.16
SS18-215ENST00000580642 PTPN9P43378 593 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 PSEN1P49768 467 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 CACNA2D1P54289 1103 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 ARPP19P56211 112 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 DAOAP59103 153 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 YWHAZP63104 245 aaKnown RBP16.03■□□□□ 0.16
SS18-215ENST00000580642 MESDQ14696 234 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 C2CD6Q53TS8 623 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 NT5DC3Q86UY8 548 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 TDHQ8IZJ6 230 aa16.03■□□□□ 0.16
SS18-215ENST00000580642 KHSRPQ92945 711 aaKnown RBP eCLIP16.03■□□□□ 0.164e-7■■■□□ 16.7
SS18-215ENST00000580642 MCEEQ96PE7 176 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms