RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZNF500O60304 480 aaPredicted RBP17■□□□□ 0.31
SS18-211ENST00000578954 ADH1AP07327 375 aa17■□□□□ 0.31
SS18-211ENST00000578954 ADCY1Q08828 1119 aa17■□□□□ 0.31
SS18-211ENST00000578954 MAMLD1Q13495 774 aa17■□□□□ 0.31
SS18-211ENST00000578954 C2CD6Q53TS8 623 aa17■□□□□ 0.31
SS18-211ENST00000578954 OLFML1Q6UWY5 402 aa17■□□□□ 0.31
SS18-211ENST00000578954 TTC9BQ8N6N2 239 aa17■□□□□ 0.31
SS18-211ENST00000578954 SPATA17Q96L03 361 aa17■□□□□ 0.31
SS18-211ENST00000578954 EMILIN2Q9BXX0 1053 aa17■□□□□ 0.31
SS18-211ENST00000578954 SYNCQ9H7C4 482 aa17■□□□□ 0.31
SS18-211ENST00000578954 SLC28A3Q9HAS3 691 aa17■□□□□ 0.31
SS18-211ENST00000578954 MRPL47Q9HD33 250 aaKnown RBP17■□□□□ 0.31
SS18-211ENST00000578954 ENTPD7Q9NQZ7 604 aa17■□□□□ 0.31
SS18-211ENST00000578954 ST7Q9NRC1 585 aa17■□□□□ 0.31
SS18-211ENST00000578954 PARVAQ9NVD7 372 aa17■□□□□ 0.31
SS18-211ENST00000578954 COG5Q9UP83 839 aa17■□□□□ 0.31
SS18-211ENST00000578954 USP3Q9Y6I4 520 aa17■□□□□ 0.31
SS18-211ENST00000578954 FAM170AA1A519 330 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 FBXO21O94952 628 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 GRIK1P39086 918 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 TUFMP49411 452 aaKnown RBP16.99■□□□□ 0.31
SS18-211ENST00000578954 RPL10AP62906 217 aaKnown RBP16.99■□□□□ 0.31
SS18-211ENST00000578954 CYP4A22Q5TCH4 519 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 LLGL2Q6P1M3 1020 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 LILRA6Q6PI73 481 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 NYAP1Q6ZVC0 841 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 FAM183BPQ6ZVS7 135 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 ARCQ7LC44 396 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 GPRIN1Q7Z2K8 1008 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 TCEAL8Q8IYN2 117 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 SLC35G2Q8TBE7 412 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 TIFAQ96CG3 184 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 LRRC4Q9HBW1 653 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 CNGB3Q9NQW8 809 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 IL37Q9NZH6 218 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 MYO1AQ9UBC5 1043 aa16.99■□□□□ 0.31
SS18-211ENST00000578954 COL4A4P53420 1690 aaPredicted RBP16.99■□□□□ 0.31
SS18-211ENST00000578954 SIGLEC16A6NMB1 481 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 HIDE1A8MVS5 230 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 SEC24AO95486 1093 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 IRS1P35568 1242 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 CDR1P51861 262 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 SLC6A3Q01959 620 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 ADIGQ0VDE8 80 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 DUSP4Q13115 394 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 IFI16Q16666 785 aaKnown RBP16.98■□□□□ 0.31
SS18-211ENST00000578954 LRIT3Q3SXY7 679 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 PLPP4Q5VZY2 271 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 PM20D1Q6GTS8 502 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 DNAJC24Q6P3W2 148 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 SLC26A9Q7LBE3 791 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 ZNF564Q8TBZ8 553 aaPredicted RBP16.98■□□□□ 0.31
SS18-211ENST00000578954 NUP85Q9BW27 656 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 OSGEPQ9NPF4 335 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 ASNSD1Q9NWL6 643 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 COMMD8Q9NX08 183 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 CTTNBP2NLQ9P2B4 639 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 FBXW11Q9UKB1 542 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 GUCA1BQ9UMX6 200 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 PCDHGC5Q9Y5F6 944 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 CHD9Q3L8U1 2897 aa16.98■□□□□ 0.31
SS18-211ENST00000578954 FAM92AA1XBS5 289 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 MACROD2A1Z1Q3 448 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 SART1O43290 800 aaKnown RBP16.97■□□□□ 0.31
SS18-211ENST00000578954 GLI1P08151 1106 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 ATF6P18850 670 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 GPR15P49685 360 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 TKTL1P51854 596 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 SLC5A3P53794 718 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 MRPS5P82675 430 aaKnown RBP16.97■□□□□ 0.31
SS18-211ENST00000578954 DDR2Q16832 855 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 MGAT5BQ3V5L5 792 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 OR6B2Q6IFH4 312 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 BHLHA9Q7RTU4 235 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 SCN4BQ8IWT1 228 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 SIX6OS1Q8N1H7 587 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 TPCN2Q8NHX9 752 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 FEZF2Q8TBJ5 459 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 FNIP1Q8TF40 1166 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 IRGQQ8WZA9 623 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 KHSRPQ92945 711 aaKnown RBP eCLIP16.97■□□□□ 0.313e-7■■■■□ 20.8
SS18-211ENST00000578954 PIWIL1Q96J94 861 aaKnown RBP16.97■□□□□ 0.31
SS18-211ENST00000578954 SELENOOQ9BVL4 669 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 CHORDC1Q9UHD1 332 aaPredicted RBP16.97■□□□□ 0.31
SS18-211ENST00000578954 LCMT1Q9UIC8 334 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 TMEM59LQ9UK28 342 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 SLC27A5Q9Y2P5 690 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 YIPF1Q9Y548 306 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 PAXBP1Q9Y5B6 917 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 CAPN6Q9Y6Q1 641 aa16.97■□□□□ 0.31
SS18-211ENST00000578954 ATG2AQ2TAZ0 1938 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 LAMA2P24043 3122 aaKnown RBP16.96■□□□□ 0.31
SS18-211ENST00000578954 TMEM191CA6NGB0 347 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 EPOPA6NHQ4 379 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 TGM5O43548 720 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 LPXNO60711 386 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 MOCS3O95396 460 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 KRT3P12035 628 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 LCP1P13796 627 aa16.96■□□□□ 0.31
SS18-211ENST00000578954 CLCN4P51793 760 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms