RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ARHGAP25P42331 645 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 BRCC3P46736 316 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 RPS9P46781 194 aaKnown RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 PDE6CP51160 858 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 CLCNKBP51801 687 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 OSTNP61366 133 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 YWHAEP62258 255 aaKnown RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 TFAMQ00059 246 aaKnown RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 NCOA4Q13772 614 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 PPP2R5DQ14738 602 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 NAB2Q15742 525 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 SGSM1Q2NKQ1 1148 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 ASTE1Q2TB18 679 aaPredicted RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 SEZ6Q53EL9 994 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 TDRD10Q5VZ19 366 aaKnown RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 LMBRD2Q68DH5 695 aaPredicted RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 ALKBH5Q6P6C2 394 aaKnown RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 GPIHBP1Q8IV16 184 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 ARHGEF19Q8IW93 802 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 CELF5Q8N6W0 485 aaKnown RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 MYRIPQ8NFW9 859 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 FAM3CQ92520 227 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 TAF4BQ92750 862 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 ELSPBP1Q96BH3 223 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 TCEAL4Q96EI5 215 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 ACAP3Q96P50 834 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 TRMT61BQ9BVS5 477 aaKnown RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 HAPLN2Q9GZV7 340 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 PDZD7Q9H5P4 517 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 GOLGA2P5Q9HBQ8 144 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 PRMT8Q9NR22 394 aaPredicted RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 GDE1Q9NZC3 331 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 INTUQ9ULD6 942 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 REXO2Q9Y3B8 237 aaKnown RBP10.79□□□□□ -0.68
SS18-207ENST00000577636 MIA3Q5JRA6 1907 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 CACNA1AO00555 2505 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 FANCMQ8IYD8 2048 aa10.79□□□□□ -0.68
SS18-207ENST00000577636 A0A087X0T9 212 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 MACROD2A1Z1Q3 448 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 RIOK3O14730 519 aaKnown RBP10.78□□□□□ -0.68
SS18-207ENST00000577636 EDN1P05305 212 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 H2AFZP0C0S5 128 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 FAM228BP0C875 321 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 P4HA1P13674 534 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 FGFR3P22607 806 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 GDI1P31150 447 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 TNFSF9P41273 254 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 SRSF5Q13243 272 aaKnown RBP10.78□□□□□ -0.68
SS18-207ENST00000577636 SIM2Q14190 667 aaPredicted RBP10.78□□□□□ -0.68
SS18-207ENST00000577636 FAM78AQ5JUQ0 283 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 EEF1DP3Q658K8 133 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 HEATR6Q6AI08 1181 aaKnown RBP10.78□□□□□ -0.68
SS18-207ENST00000577636 H2AFVQ71UI9 128 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 TRAPPC11Q7Z392 1133 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 ZNF571Q7Z3V5 609 aaPredicted RBP10.78□□□□□ -0.68
SS18-207ENST00000577636 NT5DC4Q86YG4 428 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 FAM71AQ8IYT1 594 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 SLC35F6Q8N357 371 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 MNS1Q8NEH6 495 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 CTNNBL1Q8WYA6 563 aaPredicted RBP10.78□□□□□ -0.68
SS18-207ENST00000577636 SHC3Q92529 594 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 ZNF516Q92618 1163 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 NELL1Q92832 810 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 SEMA4DQ92854 862 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 CALR3Q96L12 384 aaKnown RBP10.78□□□□□ -0.68
SS18-207ENST00000577636 AGPAT1Q99943 283 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 FAM126AQ9BYI3 521 aaPredicted RBP10.78□□□□□ -0.68
SS18-207ENST00000577636 PDCL3Q9H2J4 239 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 CYP4F11Q9HBI6 524 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 MTRRQ9UBK8 725 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 NAGPAQ9UK23 515 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 ATP8B3O60423 1300 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 NCOR2Q9Y618 2525 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 ZNF292O60281 2723 aa10.78□□□□□ -0.68
SS18-207ENST00000577636 UQCRHLA0A096LP55 91 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 SHISA7A6NL88 538 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 CHURC1-FNTBB4DL54 471 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 NRG2O14511 850 aaPredicted RBP10.77□□□□□ -0.69
SS18-207ENST00000577636 ABLIM1O14639 778 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 ZNF197O14709 1029 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 TRAPPC3O43617 180 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 FAM189A1O60320 539 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 GDF9O60383 454 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 SLU7O95391 586 aaKnown RBP10.77□□□□□ -0.69
SS18-207ENST00000577636 UQCRHP07919 91 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 RETP07949 1114 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 MYL4P12829 197 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 GJA1P17302 382 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 VIPR2P41587 438 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 GRM5P41594 1212 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 CXCL12P48061 93 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 FNTBP49356 437 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 CCR3P51677 355 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 TUBB4BP68371 445 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 SATB1Q01826 763 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 DMWDQ09019 674 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 CUL2Q13617 745 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 ZNF699Q32M78 642 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 CYP4A22Q5TCH4 519 aa10.77□□□□□ -0.69
SS18-207ENST00000577636 LAIR1Q6GTX8 287 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms