RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 CRY1Q16526 586 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 USP39Q53GS9 565 aaKnown RBP12.89□□□□□ -0.35
CAPN3-220ENST00000569827 C4orf50Q6ZRC1 276 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 DENND5BQ6ZUT9 1274 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 HS2ST1Q7LGA3 356 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 RASSF3Q86WH2 238 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 TMEFF1Q8IYR6 380 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 FUBP3Q96I24 572 aaKnown RBP eCLIP12.89□□□□□ -0.35
CAPN3-220ENST00000569827 CNOT6LQ96LI5 555 aaKnown RBP12.89□□□□□ -0.35
CAPN3-220ENST00000569827 ZNF518BQ9C0D4 1074 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 TMEM74BQ9NUR3 256 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 TRPM5Q9NZQ8 1165 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 CFAP97Q9P2B7 532 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 SEL1LQ9UBV2 794 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 MBD1Q9UIS9 605 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-220ENST00000569827 KNL1Q8NG31 2342 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 TMEM131Q92545 1883 aa12.89□□□□□ -0.35
CAPN3-220ENST00000569827 ANKRD11Q6UB99 2663 aaPredicted RBP12.88□□□□□ -0.35
CAPN3-220ENST00000569827 PLXNB3Q9ULL4 1909 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 NUMA1Q14980 2115 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 FASNP49327 2511 aaKnown RBP12.88□□□□□ -0.35
CAPN3-220ENST00000569827 CELSR3Q9NYQ7 3312 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 SOBPA7XYQ1 873 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 LDHAP00338 332 aaKnown RBP12.88□□□□□ -0.35
CAPN3-220ENST00000569827 TNNC2P02585 160 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 MBL2P11226 248 aaPredicted RBP12.88□□□□□ -0.35
CAPN3-220ENST00000569827 CHRM1P11229 460 aaPredicted RBP12.88□□□□□ -0.35
CAPN3-220ENST00000569827 ANXA13P27216 316 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 HOXD13P35453 343 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 STAT6P42226 847 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 MAGEA11P43364 429 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 TAF10Q12962 218 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 DHCR24Q15392 516 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 DAB2IPQ5VWQ8 1189 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 NAT16Q8N8M0 369 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 IL17RCQ8NAC3 791 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 RDH13Q8NBN7 331 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 HMGB4Q8WW32 186 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 WBP2Q969T9 261 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 EXOC4Q96A65 974 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 FNBP1Q96RU3 617 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 OLFML3Q9NRN5 406 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 BCCIPQ9P287 314 aaKnown RBP eCLIP12.88□□□□□ -0.35
CAPN3-220ENST00000569827 CDH9Q9ULB4 789 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 PCDHB13Q9Y5F0 798 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 PTPRBP23467 1997 aa12.88□□□□□ -0.35
CAPN3-220ENST00000569827 FRMD3A2A2Y4 597 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 ZNF840PA6NDX5 716 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 TRIM24O15164 1050 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 ADAM23O75077 832 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 DLATP10515 647 aaKnown RBP12.87□□□□□ -0.35
CAPN3-220ENST00000569827 IRF1P10914 325 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 WARSP23381 471 aaKnown RBP12.87□□□□□ -0.35
CAPN3-220ENST00000569827 WASP42768 502 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 MYO1EQ12965 1108 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 RESTQ13127 1097 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 TRIM61Q5EBN2 209 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 RHBDF2Q6PJF5 856 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 OR2I1PQ8NGU4 316 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 OR6B3Q8NGW1 331 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 SPATA17Q96L03 361 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 SCNM1Q9BWG6 230 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 TMEM121BQ9BXQ6 578 aaPredicted RBP12.87□□□□□ -0.35
CAPN3-220ENST00000569827 ADAM33Q9BZ11 813 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 FOXD4L1Q9NU39 408 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 HSPBP1Q9NZL4 362 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 WASF3Q9UPY6 502 aa12.87□□□□□ -0.35
CAPN3-220ENST00000569827 R3HCC1Q9Y3T6 440 aaKnown RBP12.87□□□□□ -0.35
CAPN3-220ENST00000569827 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.87□□□□□ -0.35
CAPN3-220ENST00000569827 SRPRBQ9Y5M8 271 aaKnown RBP12.87□□□□□ -0.35
CAPN3-220ENST00000569827 SPAARA0A1B0GVQ0 90 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 TCRBV21S2A2A0A5A6 115 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 CLIC2O15247 247 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 HYAL3O43820 417 aaPredicted RBP12.86□□□□□ -0.35
CAPN3-220ENST00000569827 KAT7O95251 611 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 OAS1P00973 400 aaKnown RBP12.86□□□□□ -0.35
CAPN3-220ENST00000569827 CST3P01034 146 aaPredicted RBP12.86□□□□□ -0.35
CAPN3-220ENST00000569827 APODP05090 189 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 TCF3P15923 654 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 ITPKAP23677 461 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 TXLNAP40222 546 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 CYP2J2P51589 502 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 SLC7A9P82251 487 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 LY6G5CQ5SRR4 150 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 VSTM1Q6UX27 236 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 LIMS2Q7Z4I7 341 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 ADGRG2Q8IZP9 1017 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 PGBD3Q8N328 593 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 OLIG1Q8TAK6 271 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 MYCBPAPQ8TBZ2 947 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 SPATA18Q8TC71 538 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 CCDC127Q96BQ5 260 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 USP28Q96RU2 1077 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 PNKPQ96T60 521 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 TTLL2Q9BWV7 592 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 SNX25Q9H3E2 840 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 CD93Q9NPY3 652 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 ARHGEF4Q9NR80 690 aa12.86□□□□□ -0.35
CAPN3-220ENST00000569827 GOLGA4Q13439 2230 aaKnown RBP12.86□□□□□ -0.35
CAPN3-220ENST00000569827 LAMA5O15230 3695 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms