RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 BYSLQ13895 437 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 DPYSQ14117 519 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 TRIM25Q14258 630 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 STAT4Q14765 748 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 BRD3Q15059 726 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 PDCD1Q15116 288 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CCDC40Q4G0X9 1142 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CMPK2Q5EBM0 449 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 PITRM1Q5JRX3 1037 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 LCE5AQ5TCM9 118 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 MEX3CQ5U5Q3 659 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 GKAP1Q5VSY0 366 aaPredicted RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 NCAPH2Q6IBW4 605 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 LVRNQ6Q4G3 990 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CRELD2Q6UXH1 353 aaPredicted RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 RNF207Q6ZRF8 634 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 B4GALNT4Q76KP1 1039 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CHPFQ8IZ52 775 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 UNC5BQ8IZJ1 945 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 KIRREL3Q8IZU9 778 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 VPS52Q8N1B4 723 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 ANKRD35Q8N283 1001 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CARNMT1Q8N4J0 409 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 TEX9Q8N6V9 391 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 PAF1Q8N7H5 531 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 ZNF713Q8N859 430 aaPredicted RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 SPERTQ8NA61 448 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 OR14C36Q8NHC7 312 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 RASSF8Q8NHQ8 419 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 BRSK1Q8TDC3 778 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 AFAP1L1Q8TED9 768 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 DIS3LQ8TF46 1054 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 TGFBRAP1Q8WUH2 860 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 ATXN2LQ8WWM7 1075 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 IFT81Q8WYA0 676 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 SNF8Q96H20 258 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 PSKH2Q96QS6 385 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 MPHOSPH9Q99550 1183 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 HNRNPABQ99729 332 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 QRSL1Q9H0R6 528 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 ABCG4Q9H172 646 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 TMPRSS5Q9H3S3 457 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 ZCCHC17Q9NP64 241 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 DMAP1Q9NPF5 467 aaPredicted RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 INIPQ9NRY2 104 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 TBCCD1Q9NVR7 557 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 ANO10Q9NW15 660 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 MIS18AQ9NYP9 233 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CLIC5Q9NZA1 410 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 EVLQ9UI08 416 aaPredicted RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 PRSS50Q9UI38 385 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CCPG1Q9ULG6 757 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 R3HDM2Q9Y2K5 976 aaKnown RBP3.49□□□□□ -1.85
VPS35-208ENST00000568612 PCDHB2Q9Y5E7 798 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 NUMBLQ9Y6R0 609 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 CARMIL1Q5VZK9 1371 aa3.49□□□□□ -1.85
VPS35-208ENST00000568612 ARAP1Q96P48 1450 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 BCORL1Q5H9F3 1711 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 SPATA31E1Q6ZUB1 1445 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 LRRD1A4D1F6 860 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 TRIM43BA6NCK2 446 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 NRP1O14786 923 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 ASAP2O43150 1006 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 MFAP3LO75121 409 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 STC2O76061 302 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 GZMAP12544 262 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 IDEP14735 1019 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 TACR2P21452 398 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 GNL1P36915 607 aaPredicted RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 CASRP41180 1078 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 CCT5P48643 541 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 AARSP49588 968 aaKnown RBP eCLIP3.48□□□□□ -1.85
VPS35-208ENST00000568612 MCM2P49736 904 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 ACADVLP49748 655 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 SERPINB8P50452 374 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 GPC3P51654 580 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 AP2B1P63010 937 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 ADAM8P78325 824 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 MRPS35P82673 323 aaKnown RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 DGCR2P98153 550 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 PDE1BQ01064 536 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 DUSP2Q05923 314 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 KLC1Q07866 573 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 BNIP1Q12981 228 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 SP140Q13342 867 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 SPIDRQ14159 915 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 SIM2Q14190 667 aaPredicted RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 SPCS2Q15005 226 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.48□□□□□ -1.85
VPS35-208ENST00000568612 FAM214AQ32MH5 1076 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 PLEKHG6Q3KR16 790 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 CCDC183Q5T5S1 534 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 TWF2Q6IBS0 349 aaKnown RBP3.48□□□□□ -1.85
VPS35-208ENST00000568612 ZSCAN25Q6NSZ9 544 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 FAM173BQ6P4H8 233 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 CYB5D1Q6P9G0 228 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 ZNF449Q6P9G9 518 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 Q6ZRM9 215 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 C3orf62Q6ZUJ4 267 aa3.48□□□□□ -1.85
VPS35-208ENST00000568612 RASGRP2Q7LDG7 609 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms