RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 TCF3P15923 654 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 YWHAQP27348 245 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 PSMC2P35998 433 aaKnown RBP23.87■■□□□ 1.41
CLN3-232ENST00000568443 GALK1P51570 392 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 EML3Q32P44 896 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 C1orf220Q5T0J3 134 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 FAM35AQ86V20 835 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 FAM186BQ8IYM0 893 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 CHFRQ96EP1 664 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 P2RY13Q9BPV8 354 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 IMPG2Q9BZV3 1241 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 LINC00597Q9H2U6 94 aa23.87■■□□□ 1.41
CLN3-232ENST00000568443 CHURC1-FNTBB4DL54 471 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 K7ESF4 209 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 ATG13O75143 517 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 DRD1P21728 446 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 ID4P47928 161 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 FNTBP49356 437 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 HEATR6Q6AI08 1181 aaKnown RBP23.86■■□□□ 1.41
CLN3-232ENST00000568443 SPOPLQ6IQ16 392 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 PAQR9Q6ZVX9 377 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 SMARCD1Q96GM5 515 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 RNF38Q9H0F5 515 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 FBRSL1Q9HCM7 1045 aaKnown RBP23.86■■□□□ 1.41
CLN3-232ENST00000568443 DMAP1Q9NPF5 467 aaPredicted RBP23.86■■□□□ 1.41
CLN3-232ENST00000568443 C2orf42Q9NWW7 574 aa23.86■■□□□ 1.41
CLN3-232ENST00000568443 LEFTY2O00292 366 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 AP1G2O75843 785 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 TRIM49P0CI25 452 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 TRIM49CP0CI26 452 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 TRIM21P19474 475 aaKnown RBP23.85■■□□□ 1.41
CLN3-232ENST00000568443 GCLMP48507 274 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 NDST1P52848 882 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 SLC7A9P82251 487 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 DMWDQ09019 674 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 LONP2Q86WA8 852 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 UNC93AQ86WB7 457 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 FUKQ8N0W3 1084 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 CRYBG2Q8N1P7 616 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 PDZD8Q8NEN9 1154 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 FBXO32Q969P5 355 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.85■■□□□ 1.416e-9■■■■■ 134.6
CLN3-232ENST00000568443 ATG2BQ96BY7 2078 aa23.85■■□□□ 1.41
CLN3-232ENST00000568443 NFATC1O95644 943 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 EGFP01133 1207 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 ASPAP45381 313 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 NUCB2P80303 420 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 ZXDBP98169 803 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 ENPEPQ07075 957 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 ORC1Q13415 861 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 GPR161Q8N6U8 529 aaKnown RBP23.84■■□□□ 1.41
CLN3-232ENST00000568443 OVCA2Q8WZ82 227 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 CD101Q93033 1021 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 KRT82Q9NSB4 513 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 RMND1Q9NWS8 449 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 SMPD4Q9NXE4 827 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 CHORDC1Q9UHD1 332 aaPredicted RBP23.84■■□□□ 1.41
CLN3-232ENST00000568443 GMEB2Q9UKD1 530 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 CPQQ9Y646 472 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 DMXL1Q9Y485 3027 aa23.84■■□□□ 1.41
CLN3-232ENST00000568443 HELZP42694 1942 aaKnown RBP23.83■■□□□ 1.41
CLN3-232ENST00000568443 OLFM2O95897 454 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 OAS1P00973 400 aaKnown RBP23.83■■□□□ 1.41
CLN3-232ENST00000568443 CCDC130P13994 396 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 HOXA6P31267 233 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 CNR2P34972 360 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 PPP3CAQ08209 521 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 PNOCQ13519 176 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 FBXO43Q4G163 708 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 ZCWPW2Q504Y3 356 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 PRR23BQ6ZRT6 265 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 SMYD4Q8IYR2 804 aaPredicted RBP23.83■■□□□ 1.41
CLN3-232ENST00000568443 FMR1NBQ8N0W7 255 aaPredicted RBP23.83■■□□□ 1.41
CLN3-232ENST00000568443 CCDC150Q8NCX0 1101 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 SCAMP5Q8TAC9 235 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 SLC2A14Q8TDB8 520 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 TAS1R2Q8TE23 839 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 MMRN2Q9H8L6 949 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 COMMD8Q9NX08 183 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 HMGXB4Q9UGU5 601 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 SLC8A2Q9UPR5 921 aa23.83■■□□□ 1.41
CLN3-232ENST00000568443 SLC9A3R1O14745 358 aaPredicted RBP23.82■■□□□ 1.4
CLN3-232ENST00000568443 TNFRSF10BO14763 440 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 HRO43593 1189 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 RNF40O75150 1001 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 MBL2P11226 248 aaPredicted RBP23.82■■□□□ 1.4
CLN3-232ENST00000568443 SLC5A3P53794 718 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 SIM2Q14190 667 aaPredicted RBP23.82■■□□□ 1.4
CLN3-232ENST00000568443 LPAL2Q16609 132 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 EDRF1Q3B7T1 1238 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 NAIF1Q69YI7 327 aaPredicted RBP23.82■■□□□ 1.4
CLN3-232ENST00000568443 PKN3Q6P5Z2 889 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 KIAA1958Q8N8K9 716 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 C12orf29Q8N999 325 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 CYP3A43Q9HB55 503 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 IL37Q9NZH6 218 aa23.82■■□□□ 1.4
CLN3-232ENST00000568443 CETN3O15182 167 aa23.81■■□□□ 1.4
CLN3-232ENST00000568443 GTF2H1P32780 548 aa23.81■■□□□ 1.4
CLN3-232ENST00000568443 HECTD3Q5T447 861 aa23.81■■□□□ 1.4
CLN3-232ENST00000568443 LAIR1Q6GTX8 287 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms