RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 TCF3P15923 654 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 YWHAQP27348 245 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 PSMC2P35998 433 aaKnown RBP23.87■■□□□ 1.41
CLN3-215ENST00000565236 GALK1P51570 392 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 EML3Q32P44 896 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 C1orf220Q5T0J3 134 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 FAM35AQ86V20 835 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 FAM186BQ8IYM0 893 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 CHFRQ96EP1 664 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 P2RY13Q9BPV8 354 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 IMPG2Q9BZV3 1241 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 LINC00597Q9H2U6 94 aa23.87■■□□□ 1.41
CLN3-215ENST00000565236 CHURC1-FNTBB4DL54 471 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 K7ESF4 209 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 ATG13O75143 517 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 DRD1P21728 446 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 ID4P47928 161 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 FNTBP49356 437 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 HEATR6Q6AI08 1181 aaKnown RBP23.86■■□□□ 1.41
CLN3-215ENST00000565236 SPOPLQ6IQ16 392 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 PAQR9Q6ZVX9 377 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 SMARCD1Q96GM5 515 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 RNF38Q9H0F5 515 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 FBRSL1Q9HCM7 1045 aaKnown RBP23.86■■□□□ 1.41
CLN3-215ENST00000565236 DMAP1Q9NPF5 467 aaPredicted RBP23.86■■□□□ 1.41
CLN3-215ENST00000565236 C2orf42Q9NWW7 574 aa23.86■■□□□ 1.41
CLN3-215ENST00000565236 LEFTY2O00292 366 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 AP1G2O75843 785 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 TRIM49P0CI25 452 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 TRIM49CP0CI26 452 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 TRIM21P19474 475 aaKnown RBP23.85■■□□□ 1.41
CLN3-215ENST00000565236 GCLMP48507 274 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 NDST1P52848 882 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 SLC7A9P82251 487 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 DMWDQ09019 674 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 LONP2Q86WA8 852 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 UNC93AQ86WB7 457 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 FUKQ8N0W3 1084 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 CRYBG2Q8N1P7 616 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 PDZD8Q8NEN9 1154 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 FBXO32Q969P5 355 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.85■■□□□ 1.416e-9■■■■■ 134.6
CLN3-215ENST00000565236 ATG2BQ96BY7 2078 aa23.85■■□□□ 1.41
CLN3-215ENST00000565236 NFATC1O95644 943 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 EGFP01133 1207 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 ASPAP45381 313 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 NUCB2P80303 420 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 ZXDBP98169 803 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 ENPEPQ07075 957 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 ORC1Q13415 861 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 GPR161Q8N6U8 529 aaKnown RBP23.84■■□□□ 1.41
CLN3-215ENST00000565236 OVCA2Q8WZ82 227 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 CD101Q93033 1021 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 KRT82Q9NSB4 513 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 RMND1Q9NWS8 449 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 SMPD4Q9NXE4 827 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 CHORDC1Q9UHD1 332 aaPredicted RBP23.84■■□□□ 1.41
CLN3-215ENST00000565236 GMEB2Q9UKD1 530 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 CPQQ9Y646 472 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 DMXL1Q9Y485 3027 aa23.84■■□□□ 1.41
CLN3-215ENST00000565236 HELZP42694 1942 aaKnown RBP23.83■■□□□ 1.41
CLN3-215ENST00000565236 OLFM2O95897 454 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 OAS1P00973 400 aaKnown RBP23.83■■□□□ 1.41
CLN3-215ENST00000565236 CCDC130P13994 396 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 HOXA6P31267 233 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 CNR2P34972 360 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 PPP3CAQ08209 521 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 PNOCQ13519 176 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 FBXO43Q4G163 708 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 ZCWPW2Q504Y3 356 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 PRR23BQ6ZRT6 265 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 SMYD4Q8IYR2 804 aaPredicted RBP23.83■■□□□ 1.41
CLN3-215ENST00000565236 FMR1NBQ8N0W7 255 aaPredicted RBP23.83■■□□□ 1.41
CLN3-215ENST00000565236 CCDC150Q8NCX0 1101 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 SCAMP5Q8TAC9 235 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 SLC2A14Q8TDB8 520 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 TAS1R2Q8TE23 839 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 MMRN2Q9H8L6 949 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 COMMD8Q9NX08 183 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 HMGXB4Q9UGU5 601 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 SLC8A2Q9UPR5 921 aa23.83■■□□□ 1.41
CLN3-215ENST00000565236 SLC9A3R1O14745 358 aaPredicted RBP23.82■■□□□ 1.4
CLN3-215ENST00000565236 TNFRSF10BO14763 440 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 HRO43593 1189 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 RNF40O75150 1001 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 MBL2P11226 248 aaPredicted RBP23.82■■□□□ 1.4
CLN3-215ENST00000565236 SLC5A3P53794 718 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 SIM2Q14190 667 aaPredicted RBP23.82■■□□□ 1.4
CLN3-215ENST00000565236 LPAL2Q16609 132 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 EDRF1Q3B7T1 1238 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 NAIF1Q69YI7 327 aaPredicted RBP23.82■■□□□ 1.4
CLN3-215ENST00000565236 PKN3Q6P5Z2 889 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 KIAA1958Q8N8K9 716 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 C12orf29Q8N999 325 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 CYP3A43Q9HB55 503 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 IL37Q9NZH6 218 aa23.82■■□□□ 1.4
CLN3-215ENST00000565236 CETN3O15182 167 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 GTF2H1P32780 548 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 HECTD3Q5T447 861 aa23.81■■□□□ 1.4
CLN3-215ENST00000565236 LAIR1Q6GTX8 287 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms