RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 UGT1A10Q9HAW8 530 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 UGT1A8Q9HAW9 530 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 DDX56Q9NY93 547 aaKnown RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 SSC5DA1L4H1 1573 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 RLFQ13129 1914 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 CFAP73A6NFT4 308 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 TYROBPO43914 113 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 RNF8O76064 485 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 DDNO94850 711 aaPredicted RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 UNC5CO95185 931 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 PDGFRAP16234 1089 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 CYP3A5P20815 502 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 FAAP100Q0VG06 881 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 MKRN3Q13064 507 aaKnown RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 MDH1BQ5I0G3 518 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 GLRA4Q5JXX5 417 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 WLSQ5T9L3 541 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 SCUBE3Q8IX30 993 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 AGGF1Q8N302 714 aaeCLIP14.1□□□□□ -0.15
CLK3-215ENST00000564353 RXFP2Q8WXD0 754 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 TTC25Q96NG3 672 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 SGIP1Q9BQI5 828 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 ARHGEF3Q9NR81 526 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 FBXO6Q9NRD1 293 aaPredicted RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 RAB6BQ9NRW1 208 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 SHOC2Q9UQ13 582 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 DRG1Q9Y295 367 aaKnown RBP14.1□□□□□ -0.15
CLK3-215ENST00000564353 HES2Q9Y543 173 aa14.1□□□□□ -0.15
CLK3-215ENST00000564353 EDF1O60869 148 aaKnown RBP14.09□□□□□ -0.15
CLK3-215ENST00000564353 ABHD2P08910 425 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 SLC8A1P32418 973 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 NDST1P52848 882 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 CLNS1AP54105 237 aaKnown RBP14.09□□□□□ -0.15
CLK3-215ENST00000564353 DPYSL3Q14195 570 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 ZNF268Q14587 947 aaPredicted RBP14.09□□□□□ -0.15
CLK3-215ENST00000564353 CA9Q16790 459 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 APOBEC3FQ8IUX4 373 aaKnown RBP14.09□□□□□ -0.15
CLK3-215ENST00000564353 FAF2Q96CS3 445 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 SLC13A1Q9BZW2 595 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 CFAP69A5D8W1 941 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 ACKR2O00590 384 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 SOCS7O14512 581 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 PPEF2O14830 753 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 MCF2LO15068 1137 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 KCNN4O15554 427 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 F7P08709 466 aaPredicted RBP14.09□□□□□ -0.15
CLK3-215ENST00000564353 PYGBP11216 843 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 ELF1P32519 619 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 SESN3P58005 492 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 MBTD1Q05BQ5 628 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 PDK4Q16654 411 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 LRRC38Q5VT99 294 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 FAM183BPQ6ZVS7 135 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 ASRGL1Q7L266 308 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 RELL1Q8IUW5 271 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 PDIK1LQ8N165 341 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 PPM1NQ8N819 430 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 ATP11CQ8NB49 1132 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 CCHCR1Q8TD31 782 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.09□□□□□ -0.15
CLK3-215ENST00000564353 TMEM176AQ96HP8 235 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 PGLYRP2Q96PD5 576 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 FAM167BQ9BTA0 163 aa14.09□□□□□ -0.15
CLK3-215ENST00000564353 ZMYND8Q9ULU4 1186 aaPredicted RBP14.09□□□□□ -0.15
CLK3-215ENST00000564353 TCRBV9S1A1TA0A576 114 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 KLHL33A6NCF5 533 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 HMGCRP04035 888 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 KRT7P08729 469 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 KITP10721 976 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 BGNP21810 368 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 PTK7Q13308 1070 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 MOGSQ13724 837 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 MXD4Q14582 209 aaPredicted RBP14.08□□□□□ -0.16
CLK3-215ENST00000564353 BBS12Q6ZW61 710 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 LONP2Q86WA8 852 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 C7orf31Q8N865 590 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 TTC8Q8TAM2 541 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 CCDC110Q8TBZ0 833 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 CLEC4CQ8WTT0 213 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 HPDLQ96IR7 371 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 GPRC5DQ9NZD1 345 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 MARCOQ9UEW3 520 aaPredicted RBP14.08□□□□□ -0.16
CLK3-215ENST00000564353 PCDHGC3Q9UN70 934 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 SYNJ2BP-COX16A0A087WUM0 186 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 E2F8A0AVK6 867 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 CXorf49A8MYA2 514 aaPredicted RBP14.08□□□□□ -0.16
CLK3-215ENST00000564353 ENTPD5O75356 428 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 TRUB2O95900 331 aaKnown RBP14.08□□□□□ -0.16
CLK3-215ENST00000564353 APRTP07741 180 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 T-ENOLP0DO92 83 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 INSRRP14616 1297 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 RBL1P28749 1068 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 PHKA2P46019 1235 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 CPA2P48052 419 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 NR1H3Q13133 447 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 KRT81Q14533 505 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 CELF3Q5SZQ8 465 aaKnown RBP14.08□□□□□ -0.16
CLK3-215ENST00000564353 RNF43Q68DV7 783 aa14.08□□□□□ -0.16
CLK3-215ENST00000564353 CDCA2Q69YH5 1023 aaPredicted RBP14.08□□□□□ -0.16
CLK3-215ENST00000564353 TRIM68Q6AZZ1 485 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms