RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 RIN3Q8TB24 985 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 GIPC2Q8TF65 315 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 USP13Q92995 863 aaPredicted RBP14.95□□□□□ -0.02
LDLR-213ENST00000560502 ERGIC2Q96RQ1 377 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 NUP58Q9BVL2 599 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 GKN1Q9NS71 199 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 TMLHEQ9NVH6 421 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 THG1LQ9NWX6 298 aaKnown RBP14.95□□□□□ -0.02
LDLR-213ENST00000560502 ABI2Q9NYB9 513 aaPredicted RBP14.95□□□□□ -0.02
LDLR-213ENST00000560502 CCL26Q9Y258 94 aa14.95□□□□□ -0.02
LDLR-213ENST00000560502 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.95□□□□□ -0.02
LDLR-213ENST00000560502 HELZP42694 1942 aaKnown RBP14.95□□□□□ -0.02
LDLR-213ENST00000560502 CCDC163A0A0D9SF12 145 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 OTOL1A6NHN0 477 aaPredicted RBP14.94□□□□□ -0.02
LDLR-213ENST00000560502 SOBPA7XYQ1 873 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 KPNA7A9QM74 516 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 GDF9O60383 454 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 DDX6P26196 483 aaKnown RBP eCLIP14.94□□□□□ -0.02
LDLR-213ENST00000560502 WNT7BP56706 349 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 UBXN1Q04323 297 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 ENPEPQ07075 957 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 SV2CQ496J9 727 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 VWA3BQ502W6 1294 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 FIGNQ5HY92 759 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 PPM1JQ5JR12 505 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 NT5DC4Q86YG4 428 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 CNGA4Q8IV77 575 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 TRIM59Q8IWR1 403 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 LRRC8AQ8IWT6 810 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 DCP1BQ8IZD4 617 aaKnown RBP14.94□□□□□ -0.02
LDLR-213ENST00000560502 GAB3Q8WWW8 586 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 VPS16Q9H269 839 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 KIF9Q9HAQ2 790 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 AGPAT3Q9NRZ7 376 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 DMAC2Q9NW81 257 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 PTPRDP23468 1912 aa14.94□□□□□ -0.02
LDLR-213ENST00000560502 TRDMT1O14717 391 aaKnown RBP14.93□□□□□ -0.02
LDLR-213ENST00000560502 KIAA0391O15091 583 aaKnown RBP14.93□□□□□ -0.02
LDLR-213ENST00000560502 TADA3O75528 432 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 IL18RAPO95256 599 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 PSMC2P35998 433 aaKnown RBP14.93□□□□□ -0.02
LDLR-213ENST00000560502 RUNX3Q13761 415 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 ZNF268Q14587 947 aaPredicted RBP14.93□□□□□ -0.02
LDLR-213ENST00000560502 MIIPQ5JXC2 388 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 CEP68Q76N32 757 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 MON1AQ86VX9 555 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 CXorf38Q8TB03 319 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 LOXL4Q96JB6 756 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 ZNF560Q96MR9 790 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 PKMYT1Q99640 499 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 NDST4Q9H3R1 872 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 EBF3Q9H4W6 596 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 ARMCX3Q9UH62 379 aaPredicted RBP14.93□□□□□ -0.02
LDLR-213ENST00000560502 FRMD4BQ9Y2L6 1034 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 PCDHB5Q9Y5E4 795 aa14.93□□□□□ -0.02
LDLR-213ENST00000560502 TEX33O43247 280 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 KRT37O76014 449 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 NOL4O94818 638 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 EPN2O95208 641 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 AVPR1AP37288 418 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 PNPLA4P41247 253 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 RAP1GAPP47736 663 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 GPR15P49685 360 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 LIMK1P53667 647 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 TAF12Q16514 161 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 NFE2Q16621 373 aaPredicted RBP14.92□□□□□ -0.02
LDLR-213ENST00000560502 TXNDC8Q6A555 127 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 TRIM68Q6AZZ1 485 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 CREBRFQ8IUR6 639 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 BRSK2Q8IWQ3 736 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 PDCL2Q8N4E4 241 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 MAB21L3Q8N8X9 362 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 STKLD1Q8NE28 680 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 POMGNT1Q8WZA1 660 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 PANX2Q96RD6 677 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 ABCB6Q9NP58 842 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 TDP1Q9NUW8 608 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 L1RE1Q9UN81 338 aa14.92□□□□□ -0.02
LDLR-213ENST00000560502 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.92□□□□□ -0.02
LDLR-213ENST00000560502 CEP295Q9C0D2 2601 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 AKR1B15C9JRZ8 316 aaPredicted RBP14.91□□□□□ -0.02
LDLR-213ENST00000560502 RPP40O75818 363 aaKnown RBP14.91□□□□□ -0.02
LDLR-213ENST00000560502 AKAP3O75969 853 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 EGFP01133 1207 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 CSH1P0DML2 217 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 CSH2P0DML3 217 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 ARSAP15289 507 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 POLR2BP30876 1174 aaKnown RBP14.91□□□□□ -0.02
LDLR-213ENST00000560502 TSPY1Q01534 308 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 KCNA1Q09470 495 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 GRSF1Q12849 480 aaKnown RBP eCLIP14.91□□□□□ -0.02
LDLR-213ENST00000560502 BFSP1Q12934 665 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 PDGFRLQ15198 375 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 SCARA3Q6AZY7 606 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 CACNA2D4Q7Z3S7 1137 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 C1orf127Q8N9H9 656 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 ZSWIM2Q8NEG5 633 aa14.91□□□□□ -0.02
LDLR-213ENST00000560502 CACTINQ8WUQ7 758 aaKnown RBP14.91□□□□□ -0.02
LDLR-213ENST00000560502 MRPS31Q92665 395 aaKnown RBP14.91□□□□□ -0.02
LDLR-213ENST00000560502 TRMT2BQ96GJ1 504 aaKnown RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms