RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 FUBP3Q96I24 572 aaKnown RBP eCLIP11.8□□□□□ -0.52
USP3-218ENST00000560202 PIWIL1Q96J94 861 aaKnown RBP11.8□□□□□ -0.52
USP3-218ENST00000560202 TUBB2BQ9BVA1 445 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 HERC2P3Q9BVR0 1158 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 DMAP1Q9NPF5 467 aaPredicted RBP11.8□□□□□ -0.52
USP3-218ENST00000560202 ABI2Q9NYB9 513 aaPredicted RBP11.8□□□□□ -0.52
USP3-218ENST00000560202 FAM53CQ9NYF3 392 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 MTRRQ9UBK8 725 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 CDC23Q9UJX2 597 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 TMEM59LQ9UK28 342 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 PCDHB5Q9Y5E4 795 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 NR2E3Q9Y5X4 410 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 BACE2Q9Y5Z0 518 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 MRFAP1Q9Y605 127 aa11.8□□□□□ -0.52
USP3-218ENST00000560202 PTPRSQ13332 1948 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 SPDYE4A6NLX3 237 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 C2CD2LO14523 706 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 SPOPO43791 374 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 SRGAP2O75044 1071 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 TCP1P17987 556 aaKnown RBP11.79□□□□□ -0.52
USP3-218ENST00000560202 CYP2F1P24903 491 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 SCNN1AP37088 669 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 GRIK1P39086 918 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 GLUD2P49448 558 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 TKTL1P51854 596 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 RNASE9P60153 205 aaKnown RBP11.79□□□□□ -0.52
USP3-218ENST00000560202 DSG1Q02413 1049 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 ADCY1Q08828 1119 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 ZNF252P-AS1Q0IIN9 211 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 PSMD5Q16401 504 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 RAB41Q5JT25 222 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 SLC8B1Q6J4K2 584 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 CPNE8Q86YQ8 564 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 SIX6OS1Q8N1H7 587 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 EMC1Q8N766 993 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 FBXO22Q8NEZ5 403 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.79□□□□□ -0.52
USP3-218ENST00000560202 FNIP1Q8TF40 1166 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 CLEC4CQ8WTT0 213 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 TSC1Q92574 1164 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 KHSRPQ92945 711 aaKnown RBP eCLIP11.79□□□□□ -0.52
USP3-218ENST00000560202 PGLYRP2Q96PD5 576 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 OSBPL9Q96SU4 736 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 PSMB7Q99436 277 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 PNPLA8Q9NP80 782 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 CDY1Q9Y6F8 540 aa11.79□□□□□ -0.52
USP3-218ENST00000560202 LCHNA4D1U4 455 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 MIF4GDA9UHW6 222 aaKnown RBP11.78□□□□□ -0.52
USP3-218ENST00000560202 F8VP50 259 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 FGF18O76093 207 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 CXCR5P32302 372 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 MAN1A1P33908 653 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 MAGEA10P43363 369 aaPredicted RBP11.78□□□□□ -0.52
USP3-218ENST00000560202 MAGEA11P43364 429 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 NDUFV1P49821 464 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 KRT17Q04695 432 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 SMARCB1Q12824 385 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 PIGHQ14442 188 aaPredicted RBP11.78□□□□□ -0.52
USP3-218ENST00000560202 TAF5Q15542 800 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 C9orf50Q5SZB4 431 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 VSTM1Q6UX27 236 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 SLC26A9Q7LBE3 791 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 GPRIN1Q7Z2K8 1008 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 ATAD1Q8NBU5 361 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 CD101Q93033 1021 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 STK39Q9UEW8 545 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 VWA8A3KMH1 1905 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 MTMR11A4FU01 709 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 C2CD4BA6NLJ0 364 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 KCNK3O14649 394 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 ZNF185O15231 689 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 DDX3YO15523 660 aaKnown RBP11.78□□□□□ -0.52
USP3-218ENST00000560202 ADAM12O43184 909 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 GRAP2O75791 330 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 FBXO21O94952 628 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 URODP06132 367 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 RPL17P18621 184 aaKnown RBP11.78□□□□□ -0.52
USP3-218ENST00000560202 GPD1P21695 349 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 PSMA2P25787 234 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 CTNNA2P26232 953 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 FLT3P36888 993 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 ZNF143P52747 638 aaPredicted RBP11.78□□□□□ -0.52
USP3-218ENST00000560202 MRPS5P82675 430 aaKnown RBP11.78□□□□□ -0.52
USP3-218ENST00000560202 WHAMMP3Q1A5X7 153 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 EFHC1Q5JVL4 640 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 RNF19BQ6ZMZ0 732 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 ARCQ7LC44 396 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 SCN4BQ8IWT1 228 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 VPS52Q8N1B4 723 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 NIPA2Q8N8Q9 360 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 SPPL2BQ8TCT7 592 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 COG1Q8WTW3 980 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 C2orf15Q8WU43 125 aaKnown RBP11.78□□□□□ -0.52
USP3-218ENST00000560202 RXFP2Q8WXD0 754 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 NDRG1Q92597 394 aaKnown RBP11.78□□□□□ -0.52
USP3-218ENST00000560202 CLSTN3Q9BQT9 956 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 ULBP1Q9BZM6 244 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 CNGB3Q9NQW8 809 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 USTQ9Y2C2 406 aa11.78□□□□□ -0.52
USP3-218ENST00000560202 VNN2O95498 520 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms