RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 RSPRY1Q96DX4 576 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 SIGLEC11Q96RL6 698 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 CXorf36Q9H7Y0 433 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 SNX15Q9NRS6 342 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 PCDHA6Q9UN73 950 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 SPEF1Q9Y4P9 236 aa3.4□□□□□ -1.87
VPS13C-205ENST00000558088 TULP3O75386 442 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 IL33O95760 270 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 FGAP02671 866 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 THP07101 528 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 CSF1RP07333 972 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 T-ENOLP0DO92 83 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 CDK11BP21127 795 aaKnown RBP3.39□□□□□ -1.87
VPS13C-205ENST00000558088 ADORA2AP29274 412 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 MTHFSP49914 203 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 UCP3P55916 312 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 FAM50AQ14320 339 aaKnown RBP3.39□□□□□ -1.87
VPS13C-205ENST00000558088 CYP1B1Q16678 543 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 RNASE12Q5GAN4 147 aaKnown RBP3.39□□□□□ -1.87
VPS13C-205ENST00000558088 RNF187Q5TA31 235 aaPredicted RBP3.39□□□□□ -1.87
VPS13C-205ENST00000558088 DPY19L3Q6ZPD9 716 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 C9orf47Q6ZRZ4 202 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 HS6ST2Q96MM7 605 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 PRR25Q96S07 402 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 HIPK2Q9H2X6 1198 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 HS3ST3B1Q9Y662 390 aa3.39□□□□□ -1.87
VPS13C-205ENST00000558088 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.39□□□□□ -1.87
VPS13C-205ENST00000558088 ZRANB2O95218 330 aaKnown RBP eCLIP3.38□□□□□ -1.87
VPS13C-205ENST00000558088 MT-CO3P00414 261 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 TGFB3P10600 412 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 PSG1P11464 419 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 CYP19A1P11511 503 aaPredicted RBP3.38□□□□□ -1.87
VPS13C-205ENST00000558088 HOXD9P28356 352 aaPredicted RBP3.38□□□□□ -1.87
VPS13C-205ENST00000558088 PRKAR1BP31321 381 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 GKP32189 559 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 HTR6P50406 440 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 DGKEP52429 567 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 COPB1P53618 953 aaKnown RBP3.38□□□□□ -1.87
VPS13C-205ENST00000558088 RPS13P62277 151 aaKnown RBP3.38□□□□□ -1.87
VPS13C-205ENST00000558088 CERCAMQ5T4B2 595 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 DAB2IPQ5VWQ8 1189 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 VSTM1Q6UX27 236 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 SPARTQ8N0X7 666 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 PRR18Q8N4B5 295 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 ARFGAP1Q8N6T3 406 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 ZNF398Q8TD17 642 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 MAP4K1Q92918 833 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 SMAD5Q99717 465 aaKnown RBP3.38□□□□□ -1.87
VPS13C-205ENST00000558088 CPA4Q9UI42 421 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 SNX14Q9Y5W7 946 aa3.38□□□□□ -1.87
VPS13C-205ENST00000558088 B4DGG1 531 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 M0R3H8 397 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 VNN1O95497 513 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 POU2F2P09086 479 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 SLC11A2P49281 568 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 NKX6-1P78426 367 aaPredicted RBP3.37□□□□□ -1.87
VPS13C-205ENST00000558088 ERV3-1Q14264 604 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 LY6KQ17RY6 165 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 LEXMQ3ZCV2 418 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 CC2D1BQ5T0F9 858 aaKnown RBP3.37□□□□□ -1.87
VPS13C-205ENST00000558088 LMBRD2Q68DH5 695 aaPredicted RBP3.37□□□□□ -1.87
VPS13C-205ENST00000558088 DEF8Q6ZN54 512 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 DCDC5Q6ZRR9 648 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 COLCA1Q6ZS62 124 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 PTCHD4Q6ZW05 846 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 CATIPQ7Z7H3 387 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 NGDNQ8NEJ9 315 aaKnown RBP3.37□□□□□ -1.87
VPS13C-205ENST00000558088 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.37□□□□□ -1.87
VPS13C-205ENST00000558088 MPLKIPQ8TAP9 179 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 MVB12AQ96EY5 273 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 MAP3K14Q99558 947 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 MESP1Q9BRJ9 268 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 C17orf80Q9BSJ5 609 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 TRMOQ9BU70 441 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 FAM234AQ9H0X4 552 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 PIH1D1Q9NWS0 290 aaKnown RBP3.37□□□□□ -1.87
VPS13C-205ENST00000558088 ASIC5Q9NY37 505 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 MED16Q9Y2X0 877 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 TNKSO95271 1327 aa3.37□□□□□ -1.87
VPS13C-205ENST00000558088 TLR2O60603 784 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 PMPCBO75439 489 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 VCAM1P19320 739 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 KCNA3P22001 575 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 CDKN2AP42771 156 aaKnown RBP3.36□□□□□ -1.87
VPS13C-205ENST00000558088 NANOS2P60321 138 aaKnown RBP3.36□□□□□ -1.87
VPS13C-205ENST00000558088 SRSF1Q07955 248 aaKnown RBP eCLIP3.36□□□□□ -1.87
VPS13C-205ENST00000558088 CCNIQ14094 377 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 KCNB1Q14721 858 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 LARS2Q15031 903 aaKnown RBP3.36□□□□□ -1.87
VPS13C-205ENST00000558088 SLC9C1Q4G0N8 1177 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 PLA1AQ53H76 456 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 TMTC4Q5T4D3 741 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 EGFLAMQ63HQ2 1017 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 ZNF783Q6ZMS7 281 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 ZNF280BQ86YH2 543 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 LIX1LQ8IVB5 337 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.36□□□□□ -1.87
VPS13C-205ENST00000558088 SLC15A4Q8N697 577 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 DNAJC5GQ8N7S2 189 aa3.36□□□□□ -1.87
VPS13C-205ENST00000558088 BPIFB1Q8TDL5 484 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms