RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 SLC9A9Q8IVB4 645 aa15.56■□□□□ 0.08
SHMT2-235ENST00000557740 FAM160A2Q8N612 972 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-235ENST00000557740 PDZD8Q8NEN9 1154 aa15.56■□□□□ 0.08
SHMT2-235ENST00000557740 RPLP0P6Q8NHW5 317 aa15.56■□□□□ 0.08
SHMT2-235ENST00000557740 CCDC26Q8TAB7 109 aa15.56■□□□□ 0.08
SHMT2-235ENST00000557740 FBXO32Q969P5 355 aa15.56■□□□□ 0.08
SHMT2-235ENST00000557740 KCTD10Q9H3F6 313 aa15.56■□□□□ 0.08
SHMT2-235ENST00000557740 SMPD4Q9NXE4 827 aa15.56■□□□□ 0.08
SHMT2-235ENST00000557740 FRMD4BQ9Y2L6 1034 aa15.56■□□□□ 0.08
SHMT2-235ENST00000557740 CPQQ9Y646 472 aa15.56■□□□□ 0.08
SHMT2-235ENST00000557740 ZNF638Q14966 1978 aaKnown RBP15.56■□□□□ 0.08
SHMT2-235ENST00000557740 CCDC163A0A0D9SF12 145 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 MED19A0JLT2 244 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-235ENST00000557740 CALUO43852 315 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-235ENST00000557740 OAS1P00973 400 aaKnown RBP15.55■□□□□ 0.08
SHMT2-235ENST00000557740 CCDC192P0DO97 292 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 YWHAQP27348 245 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 HOXC13P31276 330 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 SYKP43405 635 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 CDH8P55286 799 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 CLDN10P78369 228 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 CEP135Q66GS9 1140 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 DDX42Q86XP3 938 aaKnown RBP eCLIP15.55■□□□□ 0.08
SHMT2-235ENST00000557740 NUP93Q8N1F7 819 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 CAMKK1Q8N5S9 505 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 TMC2Q8TDI7 906 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 GAB3Q8WWW8 586 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 SMARCD1Q96GM5 515 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 HHIPQ96QV1 700 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 LINC00597Q9H2U6 94 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 DMAP1Q9NPF5 467 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-235ENST00000557740 KRT82Q9NSB4 513 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 SEMA4GQ9NTN9 838 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 TMEM30AQ9NV96 361 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 DMAC2Q9NW81 257 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 HPSEQ9Y251 543 aa15.55■□□□□ 0.08
SHMT2-235ENST00000557740 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.55■□□□□ 0.08
SHMT2-235ENST00000557740 SLC9A3R1O14745 358 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-235ENST00000557740 VNN1O95497 513 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 OLFM2O95897 454 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 C4BPAP04003 597 aaKnown RBP15.54■□□□□ 0.08
SHMT2-235ENST00000557740 RPN1P04843 607 aaKnown RBP15.54■□□□□ 0.08
SHMT2-235ENST00000557740 MBL2P11226 248 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-235ENST00000557740 TRIM21P19474 475 aaKnown RBP15.54■□□□□ 0.08
SHMT2-235ENST00000557740 PIK3CAP42336 1068 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 DLG4P78352 724 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 SGSM1Q2NKQ1 1148 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 CACNA2D4Q7Z3S7 1137 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 FILIP1Q7Z7B0 1213 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 KIAA1958Q8N8K9 716 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 NETO1Q8TDF5 533 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 TMEM174Q8WUU8 243 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 OVCA2Q8WZ82 227 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 ELMO3Q96BJ8 720 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 RTKNQ9BST9 563 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 CFAP97Q9P2B7 532 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 ATP6V1DQ9Y5K8 247 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 SPTBN2O15020 2390 aa15.54■□□□□ 0.08
SHMT2-235ENST00000557740 AXIN1O15169 862 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 FOXD2O60548 495 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-235ENST00000557740 AP1G2O75843 785 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 APBB3O95704 486 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 CYP17A1P05093 508 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 SLC5A3P53794 718 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 ATXN1P54253 815 aaKnown RBP15.53■□□□□ 0.08
SHMT2-235ENST00000557740 ZXDBP98169 803 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 DMC1Q14565 340 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 CSRP2Q16527 193 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 ZACNQ401N2 412 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 PRR23CQ6ZRP0 262 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 SYT13Q7L8C5 426 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 ACOT1Q86TX2 421 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 TAF4BQ92750 862 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 CHAMP1Q96JM3 812 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 KCNK16Q96T55 309 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 IMPG2Q9BZV3 1241 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 RNF38Q9H0F5 515 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 SDCBP2Q9H190 292 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 POLR3BQ9NW08 1133 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-235ENST00000557740 PTPRDP23468 1912 aa15.53■□□□□ 0.08
SHMT2-235ENST00000557740 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-235ENST00000557740 SCAMP3O14828 347 aaKnown RBP15.52■□□□□ 0.08
SHMT2-235ENST00000557740 IKBKBO14920 756 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 AKAP3O75969 853 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 ADH1CP00326 375 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 PRR29P0C7W0 189 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 CCDC130P13994 396 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 NR2F2P24468 414 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 OPRD1P41143 372 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 NDUFA8P51970 172 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 SEC13P55735 322 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 ORC1Q13415 861 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 SV2AQ7L0J3 742 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 KBTBD6Q86V97 674 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 TSTD1Q8NFU3 115 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 SCAMP5Q8TAC9 235 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 EZH1Q92800 747 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-235ENST00000557740 LOXL4Q96JB6 756 aa15.52■□□□□ 0.08
SHMT2-235ENST00000557740 SCAND2PQ9GZW5 306 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-235ENST00000557740 NACA2Q9H009 215 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms