RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CAPN14A8MX76 684 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 SNUPNO95149 360 aaKnown RBP16.98■□□□□ 0.31
SHMT2-231ENST00000557433 SNRPAP09012 282 aaKnown RBP16.98■□□□□ 0.31
SHMT2-231ENST00000557433 BGNP21810 368 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 ELK3P41970 407 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 SESN3P58005 492 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 DYNLT1P63172 113 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 FAAP100Q0VG06 881 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 BAATQ14032 418 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-231ENST00000557433 FAM47CQ5HY64 1035 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 ANGEL2Q5VTE6 544 aaKnown RBP16.98■□□□□ 0.31
SHMT2-231ENST00000557433 ARHGAP18Q8N392 663 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 NRG4Q8WWG1 115 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 SERAC1Q96JX3 654 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 TARS2Q9BW92 718 aaKnown RBP16.98■□□□□ 0.31
SHMT2-231ENST00000557433 C1orf21Q9H246 121 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 FBXO6Q9NRD1 293 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-231ENST00000557433 RNF146Q9NTX7 359 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 CHMP2BQ9UQN3 213 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 SPDYE5A6NIY4 337 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 RBP3P10745 1247 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 PYGBP11216 843 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 CCNFP41002 786 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 BASP1P80723 227 aaKnown RBP16.98■□□□□ 0.31
SHMT2-231ENST00000557433 ROR1Q01973 937 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 GAD2Q05329 585 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 TFDP2Q14188 446 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 KCNJ11Q14654 390 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 DUOXA2Q1HG44 320 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 EP400NLQ6ZTU2 488 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 RFX6Q8HWS3 928 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 UNC45BQ8IWX7 931 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 KCTD6Q8NC69 237 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 SLC7A3Q8WY07 619 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 GATA6Q92908 595 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 ACSF2Q96CM8 615 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-231ENST00000557433 LRRC39Q96DD0 335 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 ZWILCHQ9H900 591 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 FBXO40Q9UH90 709 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 TAGLN3Q9UI15 199 aa16.98■□□□□ 0.31
SHMT2-231ENST00000557433 MAFBQ9Y5Q3 323 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-231ENST00000557433 SPATA31C2B4DYI2 1134 aa16.97■□□□□ 0.31
SHMT2-231ENST00000557433 SPECC1L-ADORA2AF8WAN1 911 aa16.97■□□□□ 0.31
SHMT2-231ENST00000557433 ATG7O95352 703 aa16.97■□□□□ 0.31
SHMT2-231ENST00000557433 OATP04181 439 aa16.97■□□□□ 0.31
SHMT2-231ENST00000557433 RFC1P35251 1148 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-231ENST00000557433 AP2B1P63010 937 aa16.97■□□□□ 0.31
SHMT2-231ENST00000557433 KBTBD12Q3ZCT8 623 aa16.97■□□□□ 0.31
SHMT2-231ENST00000557433 C4orf22Q6V702 233 aa16.97■□□□□ 0.31
SHMT2-231ENST00000557433 ZBTB45Q96K62 511 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-231ENST00000557433 SRPK1Q96SB4 655 aaKnown RBP16.97■□□□□ 0.31
SHMT2-231ENST00000557433 KLF6Q99612 283 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-231ENST00000557433 NIFKQ9BYG3 293 aaKnown RBP16.97■□□□□ 0.31
SHMT2-231ENST00000557433 ADAM33Q9BZ11 813 aa16.97■□□□□ 0.31
SHMT2-231ENST00000557433 PAK5Q9P286 719 aa16.97■□□□□ 0.31
SHMT2-231ENST00000557433 CPSF2Q9P2I0 782 aaKnown RBP16.97■□□□□ 0.31
SHMT2-231ENST00000557433 PLLPQ9Y342 182 aa16.97■□□□□ 0.31
SHMT2-231ENST00000557433 MYH9P35579 1960 aaKnown RBP16.97■□□□□ 0.31
SHMT2-231ENST00000557433 TCRBV7S3A2A0A539 114 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 KBTBD13C9JR72 458 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 VWA5AO00534 786 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 BIRC5O15392 142 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 TM7SF2O76062 418 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 RNF8O76064 485 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 GNAT1P11488 350 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 KCNA3P22001 575 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 EFNA5P52803 228 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 YWHAGP61981 247 aaKnown RBP eCLIP16.96■□□□□ 0.31
SHMT2-231ENST00000557433 TRPC3Q13507 836 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 THOC5Q13769 683 aaKnown RBP16.96■□□□□ 0.31
SHMT2-231ENST00000557433 NOMO1Q15155 1222 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 ZBTB41Q5SVQ8 909 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 KYAT3Q6YP21 454 aaKnown RBP16.96■□□□□ 0.31
SHMT2-231ENST00000557433 ADGRG6Q86SQ4 1221 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 ZC3H18Q86VM9 953 aaKnown RBP16.96■□□□□ 0.31
SHMT2-231ENST00000557433 SCUBE1Q8IWY4 988 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 CDAN1Q8IWY9 1227 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 FAM71DQ8N9W8 422 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 WDR60Q8WVS4 1066 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 SIRPGQ9P1W8 387 aa16.96■□□□□ 0.31
SHMT2-231ENST00000557433 B2RBV5 119 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 PLSCR1O15162 318 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 ADCY3O60266 1144 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 FKBP6O75344 327 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 CSDE1O75534 798 aaKnown RBP16.96■□□□□ 0.3
SHMT2-231ENST00000557433 PRKCHP24723 683 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 IL1R2P27930 398 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 TUBP50607 506 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 PTPN20Q4JDL3 420 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 AAGABQ6PD74 315 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 ARFGAP1Q8N6T3 406 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 SLC4A11Q8NBS3 891 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 AGBL3Q8NEM8 1001 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 SPATA18Q8TC71 538 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 TMEM143Q96AN5 459 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 E2F7Q96AV8 911 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 NMUR2Q9GZQ4 415 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 STN1Q9H668 368 aaKnown RBP16.96■□□□□ 0.3
SHMT2-231ENST00000557433 ZNF302Q9NR11 478 aa16.96■□□□□ 0.3
SHMT2-231ENST00000557433 ARHGEF4Q9NR80 690 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms