RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 CCDC83Q8IWF9 413 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 MSL3Q8N5Y2 521 aaKnown RBP5.71□□□□□ -1.5
SRP54-211ENST00000556445 NUP133Q8WUM0 1156 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 GCDHQ92947 438 aaPredicted RBP5.71□□□□□ -1.5
SRP54-211ENST00000556445 TRIM63Q969Q1 353 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 ZNF274Q96GC6 653 aaPredicted RBP5.71□□□□□ -1.5
SRP54-211ENST00000556445 AHCYL2Q96HN2 611 aaKnown RBP5.71□□□□□ -1.5
SRP54-211ENST00000556445 SEC62Q99442 399 aaKnown RBP5.71□□□□□ -1.5
SRP54-211ENST00000556445 SOX7Q9BT81 388 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 ZNF747Q9BV97 191 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 AP1M1Q9BXS5 423 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 UNC45AQ9H3U1 944 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 RNF41Q9H4P4 317 aaPredicted RBP5.71□□□□□ -1.5
SRP54-211ENST00000556445 USP36Q9P275 1121 aaKnown RBP5.71□□□□□ -1.5
SRP54-211ENST00000556445 SRP68Q9UHB9 627 aaKnown RBP5.71□□□□□ -1.5
SRP54-211ENST00000556445 PCDHGA9Q9Y5G4 932 aaKnown RBP5.71□□□□□ -1.5
SRP54-211ENST00000556445 PCDHGA8Q9Y5G5 932 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 PCDHGA7Q9Y5G6 932 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 PCDHGA6Q9Y5G7 932 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 PCDHGA3Q9Y5H0 932 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 PCDHGA2Q9Y5H1 932 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 DDX49Q9Y6V7 483 aaKnown RBP5.71□□□□□ -1.5
SRP54-211ENST00000556445 ZNF804BA4D1E1 1349 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 PNPLA7Q6ZV29 1317 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 ZNF532Q9HCE3 1301 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 UBR3Q6ZT12 1888 aa5.71□□□□□ -1.5
SRP54-211ENST00000556445 GOLGA6L3A6NEY3 463 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 TRIM75PA6NK02 468 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 RASA4BC9J798 803 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 RASA4O43374 803 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 AP1G1O43747 822 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 PLOD3O60568 738 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 PFKFB2O60825 505 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 PQBP1O60828 265 aaKnown RBP5.7□□□□□ -1.5
SRP54-211ENST00000556445 FKBP9O95302 570 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 PCP11498 1178 aaKnown RBP5.7□□□□□ -1.5
SRP54-211ENST00000556445 SYT1P21579 422 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 OAS2P29728 719 aaKnown RBP5.7□□□□□ -1.5
SRP54-211ENST00000556445 EVCP57679 992 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 BPIFB4P59827 614 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 OCRLQ01968 901 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 WASHC5Q12768 1159 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 GRAPQ13588 217 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 TOB2Q14106 344 aaPredicted RBP5.7□□□□□ -1.5
SRP54-211ENST00000556445 SART3Q15020 963 aaKnown RBP5.7□□□□□ -1.5
SRP54-211ENST00000556445 ME3Q16798 604 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 ATL3Q6DD88 541 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 CPLX2Q6PUV4 134 aaKnown RBP5.7□□□□□ -1.5
SRP54-211ENST00000556445 CRIP3Q6Q6R5 217 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 C15orf52Q6ZUT6 534 aaKnown RBP5.7□□□□□ -1.5
SRP54-211ENST00000556445 FKBP9P1Q75LS8 142 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 ADGRE4PQ86SQ3 457 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 Q8N1X5 172 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 MYCT1Q8N699 235 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 ANKRD53Q8N9V6 530 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 ZNF610Q8N9Z0 462 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 FAM184AQ8NB25 1140 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 PLA2G15Q8NCC3 412 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 GRAPLQ8TC17 118 aaPredicted RBP5.7□□□□□ -1.5
SRP54-211ENST00000556445 TMEM176AQ96HP8 235 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 RBM17Q96I25 401 aaKnown RBP5.7□□□□□ -1.5
SRP54-211ENST00000556445 KRT23Q9C075 422 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 NAPBQ9H115 298 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 ZSCAN16Q9H4T2 348 aaPredicted RBP5.7□□□□□ -1.5
SRP54-211ENST00000556445 MSRAQ9UJ68 235 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 LRCH1Q9Y2L9 728 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 C4AP0C0L4 1744 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 XDHP47989 1333 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 CASZ1Q86V15 1759 aa5.7□□□□□ -1.5
SRP54-211ENST00000556445 DUOX1Q9NRD9 1551 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 A0A1W2PRX2 142 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 TOR1BO14657 336 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 AREL1O15033 823 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 ULK1O75385 1050 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 BBOX1O75936 387 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 CDKL5O76039 1030 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 GFPT2O94808 682 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 LETM1O95202 739 aaPredicted RBP5.69□□□□□ -1.5
SRP54-211ENST00000556445 SERPINB2P05120 415 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 HNRNPCP07910 306 aaKnown RBP eCLIP5.69□□□□□ -1.5
SRP54-211ENST00000556445 CPA1P15085 419 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 AKAP5P24588 427 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 HOXC13P31276 330 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 HIBADHP31937 336 aaKnown RBP5.69□□□□□ -1.5
SRP54-211ENST00000556445 LSP1P33241 339 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 UBA7P41226 1012 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 IL2P60568 153 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 GSTO1P78417 241 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 SEMA5AQ13591 1074 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 ZNF267Q14586 743 aaPredicted RBP5.69□□□□□ -1.5
SRP54-211ENST00000556445 GAGE13Q4V321 117 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 KIAA1614Q5VZ46 1190 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 PGM2L1Q6PCE3 622 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 SYNE3Q6ZMZ3 975 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 RNF207Q6ZRF8 634 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 ESPNLQ6ZVH7 1005 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 ZNF804AQ7Z570 1209 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 SNX32Q86XE0 403 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 LSMEM1Q8N8F7 131 aa5.69□□□□□ -1.5
SRP54-211ENST00000556445 FAM156AQ8NDB6 213 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms