RNA–Protein interactions for RNA: ENST00000556288.5

ATXN3-238, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 901 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-238	ENST00000556288	CNTD2	Q9H8S5	307 aa		5.15	□□□□□ -1.59
ATXN3-238	ENST00000556288	SLC28A3	Q9HAS3	691 aa		5.15	□□□□□ -1.59
ATXN3-238	ENST00000556288	KCNMB3	Q9NPA1	279 aa		5.15	□□□□□ -1.59
ATXN3-238	ENST00000556288	PPARGC1A	Q9UBK2	798 aa	Known RBP	5.15	□□□□□ -1.59
ATXN3-238	ENST00000556288	NDOR1	Q9UHB4	597 aa		5.15	□□□□□ -1.59
ATXN3-238	ENST00000556288	TRPV2	Q9Y5S1	764 aa		5.15	□□□□□ -1.59
ATXN3-238	ENST00000556288	PLXNA4	Q9HCM2	1894 aa		5.15	□□□□□ -1.59
ATXN3-238	ENST00000556288	MKI67	P46013	3256 aa	Known RBP	5.15	□□□□□ -1.59
ATXN3-238	ENST00000556288	COL1A2	P08123	1366 aa		5.15	□□□□□ -1.59
ATXN3-238	ENST00000556288	MYO7A	Q13402	2215 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288		A0A087WZ62	844 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ABHD14A-ACY1	A0A1B0GW23	586 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288		A0A1W2PPC1	479 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ESYT3	A0FGR9	886 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ARHGEF35	A5YM69	484 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	DBX1	A6NMT0	343 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	PP2D1	A8MPX8	630 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ENPP3	O14638	875 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	USO1	O60763	962 aa	Known RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	MED24	O75448	989 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	SOD2	P04179	222 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	KRT18	P05783	430 aa	Known RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	PFKM	P08237	780 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	C1QTNF9	P0C862	333 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ZSCAN20	P17040	1043 aa	Predicted RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	UBA7	P41226	1012 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	RAP1GAP	P47736	663 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	TRAPPC10	P48553	1259 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	FXR1	P51114	621 aa	Known RBP eCLIP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	CDR1	P51861	262 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	PAK1	Q13153	545 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	PDIA5	Q14554	519 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	LPIN1	Q14693	890 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	SLC9A5	Q14940	896 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	STK38	Q15208	465 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	TRIM71	Q2Q1W2	868 aa	Known RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	SPECC1	Q5M775	1068 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ODR4	Q5SWX8	454 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	FAM102B	Q5T8I3	360 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	FAM109B	Q6ICB4	259 aa	Predicted RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ANO5	Q75V66	913 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	BRAP	Q7Z569	592 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	MILR1	Q7Z6M3	343 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	NOP9	Q86U38	636 aa	Known RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	CATSPER3	Q86XQ3	398 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	EXOC8	Q8IYI6	725 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	MZB1	Q8WU39	189 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	TCP11	Q8WWU5	503 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	PRPF31	Q8WWY3	499 aa	Known RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ALG3	Q92685	438 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	TSPAN17	Q96FV3	270 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	CALML4	Q96GE6	196 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ZNF396	Q96N95	335 aa	Predicted RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	MTMR9	Q96QG7	549 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	JPH2	Q9BR39	696 aa	Predicted RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	FDXACB1	Q9BRP7	624 aa	Predicted RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	GCOM2	Q9BZD3	368 aa	Predicted RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	EPB41L1	Q9H4G0	881 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ZHX3	Q9H4I2	956 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	GCM1	Q9NP62	436 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	DDX19A	Q9NUU7	478 aa	Known RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	MTUS1	Q9ULD2	1270 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	PADI3	Q9ULW8	664 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	ST3GAL5	Q9UNP4	418 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	DNM3	Q9UQ16	869 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	NOC2L	Q9Y3T9	749 aa	Known RBP	5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	PCDHB7	Q9Y5E2	793 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	PCDHA9	Q9Y5H5	950 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	CLIC4	Q9Y696	253 aa		5.14	□□□□□ -1.59
ATXN3-238	ENST00000556288	MTCL1	Q9Y4B5	1905 aa	Known RBP	5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	MBLAC1	A4D2B0	266 aa	Predicted RBP	5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	TCAF2	A6NFQ2	919 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	LRRIQ4	A6NIV6	560 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	CCDC169	A6NNP5	214 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	FAM47E-STBD1	D6RA91	191 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288		E9PMD0	336 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	RFXAP	O00287	272 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	LAD1	O00515	517 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	HGS	O14964	777 aa	Predicted RBP	5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	N4BP3	O15049	544 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	EFCAB14	O75071	495 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	MAF	O75444	373 aa	Predicted RBP	5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	CSPG5	O95196	566 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	C22orf31	O95567	290 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	CRTAM	O95727	393 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	ZSCAN22	P10073	491 aa	Predicted RBP	5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	GLDC	P23378	1020 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	GRK2	P25098	689 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	GRK3	P35626	688 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	SLC6A11	P48066	632 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	CRYBB1	P53674	252 aa	Predicted RBP	5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	EPHB3	P54753	998 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	WDR5	P61964	334 aa	Known RBP	5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	ADAM17	P78536	824 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	DEFB103A	P81534	67 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	CDC42EP1	Q00587	391 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	NCBP1	Q09161	790 aa	Known RBP	5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	LAMTOR4	Q0VGL1	99 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	DRP2	Q13474	957 aa		5.13	□□□□□ -1.59
ATXN3-238	ENST00000556288	TFDP1	Q14186	410 aa		5.13	□□□□□ -1.59

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