RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 PDE1AP54750 535 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 HOXA4Q00056 320 aaPredicted RBP4.04□□□□□ -1.76
VRK1-202ENST00000553683 GALEQ14376 348 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 SLC29A2Q14542 456 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 ZNF750Q32MQ0 723 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 DENND2CQ68D51 928 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 COL23A1Q86Y22 540 aaPredicted RBP4.04□□□□□ -1.76
VRK1-202ENST00000553683 SFTPA1Q8IWL2 248 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 LRRC71Q8N4P6 559 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 RAPGEF4Q8WZA2 1011 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 REPS1Q96D71 796 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 ZDHHC12Q96GR4 267 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 BRIP1Q9BX63 1249 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 INO80BQ9C086 356 aaPredicted RBP4.04□□□□□ -1.76
VRK1-202ENST00000553683 CHST8Q9H2A9 424 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 GAR1Q9NY12 217 aaKnown RBP4.04□□□□□ -1.76
VRK1-202ENST00000553683 CHPF2Q9P2E5 772 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 DKK4Q9UBT3 224 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 ST3GAL5Q9UNP4 418 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 FER1L4A9Z1Z3 1794 aa4.04□□□□□ -1.76
VRK1-202ENST00000553683 WIPF3A6NGB9 483 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 TMEM233B4DJY2 109 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 CD3EAPO15446 510 aaKnown RBP4.03□□□□□ -1.76
VRK1-202ENST00000553683 PARNO95453 639 aaKnown RBP4.03□□□□□ -1.76
VRK1-202ENST00000553683 MAP4K4O95819 1239 aaPredicted RBP4.03□□□□□ -1.76
VRK1-202ENST00000553683 CD19P15391 556 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 PHKG2P15735 406 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 ZKSCAN1P17029 563 aaPredicted RBP4.03□□□□□ -1.76
VRK1-202ENST00000553683 ACVR2AP27037 513 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 UQCRC1P31930 480 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 CPT1AP50416 773 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 PROK1P58294 105 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 SUMO2P61956 95 aaKnown RBP4.03□□□□□ -1.76
VRK1-202ENST00000553683 RPS16P62249 146 aaKnown RBP4.03□□□□□ -1.76
VRK1-202ENST00000553683 SP2Q02086 613 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 PCID2Q5JVF3 399 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 DEPDC1Q5TB30 811 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 FCRL6Q6DN72 434 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 CAND1Q86VP6 1230 aaKnown RBP4.03□□□□□ -1.76
VRK1-202ENST00000553683 SESTD1Q86VW0 696 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 WDR75Q8IWA0 830 aaKnown RBP4.03□□□□□ -1.76
VRK1-202ENST00000553683 SRRM1Q8IYB3 904 aaKnown RBP4.03□□□□□ -1.76
VRK1-202ENST00000553683 SIRT6Q8N6T7 355 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 FANCBQ8NB91 859 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 R3HDM4Q96D70 268 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 SNX18Q96RF0 628 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 C17orf80Q9BSJ5 609 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 COLEC11Q9BWP8 271 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 VN1R3Q9BXE9 311 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 USP22Q9UPT9 525 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 FRMD4BQ9Y2L6 1034 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 SNX14Q9Y5W7 946 aa4.03□□□□□ -1.76
VRK1-202ENST00000553683 AREL1O15033 823 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 RRP9O43818 475 aaKnown RBP4.02□□□□□ -1.77
VRK1-202ENST00000553683 RASSF9O75901 435 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 IL18RAPO95256 599 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 LATS1O95835 1130 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 CHRM5P08912 532 aaPredicted RBP4.02□□□□□ -1.77
VRK1-202ENST00000553683 IL1R1P14778 569 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 BTF3P20290 206 aaKnown RBP4.02□□□□□ -1.77
VRK1-202ENST00000553683 CERS1P27544 350 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 IL1R2P27930 398 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 ADORA2AP29274 412 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 GKP32189 559 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 CLCN2P51788 898 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 TIRAPP58753 221 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 TFF2Q03403 129 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 FOXF2Q12947 444 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 CLCA4Q14CN2 919 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 C3orf38Q5JPI3 329 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 SLC9A4Q6AI14 798 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 ZDHHC24Q6UX98 284 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 XAGE5Q8WWM1 108 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 DAZAP1Q96EP5 407 aaKnown RBP4.02□□□□□ -1.77
VRK1-202ENST00000553683 DPCDQ9BVM2 203 aaPredicted RBP4.02□□□□□ -1.77
VRK1-202ENST00000553683 SARGQ9BW04 601 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 GBA2Q9HCG7 927 aaPredicted RBP4.02□□□□□ -1.77
VRK1-202ENST00000553683 PNPLA8Q9NP80 782 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 SERGEFQ9UGK8 458 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 AMFRQ9UKV5 643 aa4.02□□□□□ -1.77
VRK1-202ENST00000553683 DRG1Q9Y295 367 aaKnown RBP4.02□□□□□ -1.77
VRK1-202ENST00000553683 SETD1BQ9UPS6 1966 aaKnown RBP4.02□□□□□ -1.77
VRK1-202ENST00000553683 CLCA1A8K7I4 914 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 A8MVJ9 347 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 BTBD19C9JJ37 291 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 PMPCBO75439 489 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 MT-ND5P03915 603 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 ANXA2P07355 339 aaKnown RBP4.01□□□□□ -1.77
VRK1-202ENST00000553683 TRIM27P14373 513 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 TPH1P17752 444 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 CTGFP29279 349 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 PTDSS1P48651 473 aaKnown RBP4.01□□□□□ -1.77
VRK1-202ENST00000553683 CARSP49589 748 aaKnown RBP4.01□□□□□ -1.77
VRK1-202ENST00000553683 TUBA4AP68366 448 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 DAG1Q14118 895 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 CYP1B1Q16678 543 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 PROSER3Q2NL68 480 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 USP17L6PQ6QN14 398 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 TRIM72Q6ZMU5 477 aa4.01□□□□□ -1.77
VRK1-202ENST00000553683 KRT28Q7Z3Y7 464 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms