RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 C1orf210Q8IVY1 113 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 MAML2Q8IZL2 1156 aaPredicted RBP10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 TRIML1Q8N9V2 468 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 CCDC150Q8NCX0 1101 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 SCAMP5Q8TAC9 235 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 CSGALNACT1Q8TDX6 532 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 FAM3CQ92520 227 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 MSANTD3Q96H12 275 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 ARID3AQ99856 593 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 MED10Q9BTT4 135 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 NT5C1AQ9BXI3 368 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 RNF38Q9H0F5 515 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 C8orf33Q9H7E9 229 aaPredicted RBP10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 METTL14Q9HCE5 456 aaKnown RBP10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 DMAP1Q9NPF5 467 aaPredicted RBP10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 HPS4Q9NQG7 708 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 KRT82Q9NSB4 513 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 FAM49BQ9NUQ9 324 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 THG1LQ9NWX6 298 aaKnown RBP10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 EHD2Q9NZN4 543 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 TRPM5Q9NZQ8 1165 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 ARHGAP26Q9UNA1 814 aa10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 MRPS17Q9Y2R5 130 aaKnown RBP10.9□□□□□ -0.66
CCDC88C-206ENST00000553437 ZFHX2Q9C0A1 2572 aaPredicted RBP10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 BICDL2A1A5D9 508 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 OTOL1A6NHN0 477 aaPredicted RBP10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 HHLA1C9JL84 531 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 SPECC1L-ADORA2AF8WAN1 911 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 PMM2O15305 246 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 RTN3O95197 1032 aaPredicted RBP10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 CKMP06732 381 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 ZDHHC11BP0C7U3 371 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 CHRNB1P11230 501 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 TCF3P15923 654 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 PFKLP17858 780 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 YWHAQP27348 245 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 CTHP32929 405 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 NBL1P41271 181 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 PPP3CCP48454 512 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 SLC5A3P53794 718 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 STX17P56962 302 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 MAP3K7CLP57077 242 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 SLC7A9P82251 487 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 USP4Q13107 963 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 PAK1Q13153 545 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 SNX30Q5VWJ9 437 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 TRIM68Q6AZZ1 485 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 TTC8Q8TAM2 541 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 SH3RF2Q8TEC5 729 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 OVCA2Q8WZ82 227 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 FBXO32Q969P5 355 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 CHFRQ96EP1 664 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 CYFIP2Q96F07 1278 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 MED15Q96RN5 788 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 CISHQ9NSE2 258 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 COMMD8Q9NX08 183 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 NDRG2Q9UN36 371 aaKnown RBP10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 CTNND2Q9UQB3 1225 aa10.89□□□□□ -0.67
CCDC88C-206ENST00000553437 PROB1E7EW31 1015 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 NCAM2O15394 837 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 OAS1P00973 400 aaKnown RBP10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 FAM200BP0CF97 657 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 ARSAP15289 507 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 ADORA2BP29275 332 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 MAGEA9P43362 315 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 FMO5P49326 533 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 PGFP49763 221 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 PDE6CP51160 858 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 KPNA1P52294 538 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 RAD23BP54727 409 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 MARSP56192 900 aaKnown RBP10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 IFRD2Q12894 506 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 RUNX3Q13761 415 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 MTF1Q14872 753 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 ITPRIPL2Q3MIP1 535 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 CCDC40Q4G0X9 1142 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 ZNF394Q53GI3 561 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 PPP1R26Q5T8A7 1209 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 MAMSTRQ6ZN01 415 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 CLEC20AQ6ZU45 233 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 GPRIN1Q7Z2K8 1008 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 RALGPS2Q86X27 583 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 TRIM59Q8IWR1 403 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 TTC39CQ8N584 583 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 UBR7Q8N806 425 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 SLC4A11Q8NBS3 891 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 PDZD8Q8NEN9 1154 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 LMO3Q8TAP4 145 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 OSCP1Q8WVF1 389 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 SLITRK1Q96PX8 696 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 CHRDQ9H2X0 955 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 CLSTN2Q9H4D0 955 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 EBF3Q9H4W6 596 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 FAM124BQ9H5Z6 455 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 LMAN1LQ9HAT1 526 aa10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 CHORDC1Q9UHD1 332 aaPredicted RBP10.88□□□□□ -0.67
CCDC88C-206ENST00000553437 ZFHX4Q86UP3 3567 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 COL4A2P08572 1712 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 SP9P0CG40 484 aa10.87□□□□□ -0.67
CCDC88C-206ENST00000553437 MTAPQ13126 283 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms