RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 DNAJB11Q9UBS4 358 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 ADAM29Q9UKF5 820 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 CNTN6Q9UQ52 1028 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 NR2E1Q9Y466 385 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 KRTAP4-8A0A0G2JLE6 195 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 PRR5-ARHGAP8B1AHC4 643 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 DCLK1O15075 740 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 SRGAP2O75044 1071 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 ITGB1P05556 798 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 SLC3A2P08195 630 aaKnown RBP6.47□□□□□ -1.37
SCFD1-208ENST00000553278 ALOX12P18054 663 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 SLC6A2P23975 617 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 PSMC2P35998 433 aaKnown RBP6.47□□□□□ -1.37
SCFD1-208ENST00000553278 ZEB1P37275 1124 aaPredicted RBP6.47□□□□□ -1.37
SCFD1-208ENST00000553278 KCNC1P48547 511 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 PXNP49023 591 aaPredicted RBP6.47□□□□□ -1.37
SCFD1-208ENST00000553278 CCR9P51686 369 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 DGKEP52429 567 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 PRKAG1P54619 331 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 EPHB3P54753 998 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 LOXL3P58215 753 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 LILRA4P59901 499 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 RNASE9P60153 205 aaKnown RBP6.47□□□□□ -1.37
SCFD1-208ENST00000553278 CSHL1Q14406 222 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 GPR68Q15743 365 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 BAK1Q16611 211 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 ALDH1L2Q3SY69 923 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 SPECC1Q5M775 1068 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 UBXN11Q5T124 520 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 EFCAB12Q6NXP0 572 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 DOK3Q7L591 496 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 RALYLQ86SE5 291 aaKnown RBP6.47□□□□□ -1.37
SCFD1-208ENST00000553278 ZNF280BQ86YH2 543 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 TBC1D22AQ8WUA7 517 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 KCNN1Q92952 543 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 PPP2R3CQ969Q6 453 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 PWWP2AQ96N64 755 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 AP1M1Q9BXS5 423 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 PCMTD2Q9NV79 361 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 ETAA1Q9NY74 926 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 KCND3Q9UK17 655 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 CLCA2Q9UQC9 943 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 CNPY2Q9Y2B0 182 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 DNAJC16Q9Y2G8 782 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 ZDHHC9Q9Y397 364 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 RAD54BQ9Y620 910 aa6.47□□□□□ -1.37
SCFD1-208ENST00000553278 MYOCOSA0A1B0GUC4 107 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 PMS2P1A4D2B8 440 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 BIN1O00499 593 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 SPTLC2O15270 562 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 DOK2O60496 412 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 PGM1P36871 562 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 NPTX2P47972 431 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 ZNF844Q08AG5 666 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 GALNT2Q10471 571 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 BOP1Q14137 746 aaKnown RBP6.46□□□□□ -1.38
SCFD1-208ENST00000553278 FAM214AQ32MH5 1076 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 TMTC3Q6ZXV5 915 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 ENOSF1Q7L5Y1 443 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 R3HCC1LQ7Z5L2 792 aaKnown RBP6.46□□□□□ -1.38
SCFD1-208ENST00000553278 FAM83AQ86UY5 434 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 XYLT1Q86Y38 959 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 SP8Q8IXZ3 490 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 CFAP52Q8N1V2 620 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 NGEFQ8N5V2 710 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 HMGB4Q8WW32 186 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 ZDHHC12Q96GR4 267 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 TRIB1Q96RU8 372 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 SPATA25Q9BR10 227 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 TRIM5Q9C035 493 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 EPB41L4BQ9H329 900 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 GHITMQ9H3K2 345 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 TMLHEQ9NVH6 421 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 HAUS2Q9NVX0 235 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 NTMQ9P121 344 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 VPS28Q9UK41 221 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 USP22Q9UPT9 525 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 CDYLQ9Y232 598 aa6.46□□□□□ -1.38
SCFD1-208ENST00000553278 A0A1W2PRX2 142 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 VWA3AA6NCI4 1184 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 SAC3D1A6NKF1 404 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 STX16-NPEPL1H3BU86 382 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 STX16O14662 325 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 CD3EAPO15446 510 aaKnown RBP6.45□□□□□ -1.38
SCFD1-208ENST00000553278 AHCYL1O43865 530 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 ADAMTS4O75173 837 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 SEMA7AO75326 666 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 STC2O76061 302 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 LARGE1O95461 756 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 PLA2G1BP04054 148 aaKnown RBP6.45□□□□□ -1.38
SCFD1-208ENST00000553278 CSF1P09603 554 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 CPA1P15085 419 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 CHRM3P20309 590 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 KCNA3P22001 575 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 MCCP23508 829 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 ABCD3P28288 659 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 GCLCP48506 637 aaPredicted RBP6.45□□□□□ -1.38
SCFD1-208ENST00000553278 TERF1P54274 439 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 RIN1Q13671 783 aa6.45□□□□□ -1.38
SCFD1-208ENST00000553278 NFIXQ14938 502 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms