RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 C2orf42Q9NWW7 574 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 TBC1D7Q9P0N9 293 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 SIX4Q9UIU6 781 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 ZMIZ1Q9ULJ6 1067 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 MAGED2Q9UNF1 606 aaPredicted RBP8.17□□□□□ -1.1
NEK3-201ENST00000550331 R3HCC1Q9Y3T6 440 aaKnown RBP8.17□□□□□ -1.1
NEK3-201ENST00000550331 SNX9Q9Y5X1 595 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 ZZEF1O43149 2961 aa8.17□□□□□ -1.1
NEK3-201ENST00000550331 KIF26AQ9ULI4 1882 aaPredicted RBP8.17□□□□□ -1.1
NEK3-201ENST00000550331 SPEGQ15772 3267 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 TRAV19A0A0A6YYK7 116 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 GOLGA8IPA6NC78 632 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 OTOL1A6NHN0 477 aaPredicted RBP8.16□□□□□ -1.1
NEK3-201ENST00000550331 GOLGA8JA6NMD2 632 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 C1QTNF9BB2RNN3 333 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 TM4SF5O14894 197 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 TADA3O75528 432 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 RPP40O75818 363 aaKnown RBP8.16□□□□□ -1.1
NEK3-201ENST00000550331 USP17L7P0C7H9 530 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 TMEM191BP0C7N4 346 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 C1QTNF9P0C862 333 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 ARSAP15289 507 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 TCF3P15923 654 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 PFKLP17858 780 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 DRD1P21728 446 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 ACAT1P24752 427 aaKnown RBP8.16□□□□□ -1.1
NEK3-201ENST00000550331 CYP2F1P24903 491 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 MAGEA11P43364 429 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 NASPP49321 788 aaPredicted RBP8.16□□□□□ -1.1
NEK3-201ENST00000550331 PDE6CP51160 858 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 EML5Q05BV3 1969 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 USP4Q13107 963 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 SLC39A14Q15043 492 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 SURF1Q15526 300 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 MAPRE1Q15691 268 aaKnown RBP8.16□□□□□ -1.1
NEK3-201ENST00000550331 ZNF77Q15935 545 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 CCDC6Q16204 474 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 DDR2Q16832 855 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 SOWAHAQ2M3V2 549 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 SDHAF4Q5VUM1 108 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 TRIM68Q6AZZ1 485 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 FAM173BQ6P4H8 233 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 PKN3Q6P5Z2 889 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 FAM171BQ6P995 826 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 VSTM1Q6UX27 236 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 UNQ6494/PRO21346Q6UXR6 183 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 C4orf50Q6ZRC1 276 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 CACNA2D4Q7Z3S7 1137 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 LIMS2Q7Z4I7 341 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 OSTM1Q86WC4 334 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 WDR49Q8IV35 697 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 CCDC65Q8IXS2 484 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 FSIP1Q8NA03 581 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 ZSWIM2Q8NEG5 633 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 RIN3Q8TB24 985 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 NUP210Q8TEM1 1887 aaPredicted RBP8.16□□□□□ -1.1
NEK3-201ENST00000550331 OSCP1Q8WVF1 389 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 ATG2BQ96BY7 2078 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 INTS4Q96HW7 963 aaKnown RBP8.16□□□□□ -1.1
NEK3-201ENST00000550331 ANKRD36BP1Q96IX9 119 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 USP28Q96RU2 1077 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 FGFBP2Q9BYJ0 223 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 KRTAP9-9Q9BYP9 154 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 KRTAP9-4Q9BYQ2 154 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 MTMR12Q9C0I1 747 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 LRRC27Q9C0I9 530 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 ARRDC1-AS1Q9H2J1 176 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 TNMDQ9H2S6 317 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 CUEDC2Q9H467 287 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 ZSCAN16Q9H4T2 348 aaPredicted RBP8.16□□□□□ -1.1
NEK3-201ENST00000550331 KIAA1586Q9HCI6 787 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 PDE11AQ9HCR9 933 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 EHD2Q9NZN4 543 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 GTF3C4Q9UKN8 822 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 SLC8A2Q9UPR5 921 aa8.16□□□□□ -1.1
NEK3-201ENST00000550331 PTPRJQ12913 1337 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 A0A087X0B3 334 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 ZNF233A6NK53 670 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 TULP1O00294 542 aaPredicted RBP8.15□□□□□ -1.1
NEK3-201ENST00000550331 EIF3DO15371 548 aaKnown RBP eCLIP8.15□□□□□ -1.1
NEK3-201ENST00000550331 PRPF6O94906 941 aaKnown RBP8.15□□□□□ -1.1
NEK3-201ENST00000550331 KCNK5O95279 499 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 EGFP01133 1207 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 TNNC2P02585 160 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 CKMP06732 381 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 GJA4P35212 333 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 RAP1GAPP47736 663 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 CEBPZQ03701 1054 aaKnown RBP8.15□□□□□ -1.1
NEK3-201ENST00000550331 STPG1Q5TH74 334 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 SCARA3Q6AZY7 606 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 SYT13Q7L8C5 426 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 KIAA1958Q8N8K9 716 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 STKLD1Q8NE28 680 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 CCDC26Q8TAB7 109 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 KBTBD7Q8WVZ9 684 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 ATP2A3Q93084 1043 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 MYLPFQ96A32 169 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 HPDLQ96IR7 371 aa8.15□□□□□ -1.1
NEK3-201ENST00000550331 ZC3H10Q96K80 434 aaKnown RBP8.15□□□□□ -1.1
NEK3-201ENST00000550331 FAM84AQ96KN4 292 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms