RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PIGRP01833 764 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 P2RY2P41231 377 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 PTGER3P43115 390 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 TOB1P50616 345 aaPredicted RBP11.28□□□□□ -0.6
VPS29-208ENST00000550267 SLC12A3P55017 1021 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 FAM193AP78312 1265 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 NR1H3Q13133 447 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 SEMA3BQ13214 749 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 SUZ12Q15022 739 aaKnown RBP11.28□□□□□ -0.6
VPS29-208ENST00000550267 CRY1Q16526 586 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 SLC39A4Q6P5W5 647 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 C19orf48Q6RUI8 117 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 LPCAT2Q7L5N7 544 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 CHCHD4Q8N4Q1 142 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 ARL14EPQ8N8R7 260 aaPredicted RBP11.28□□□□□ -0.6
VPS29-208ENST00000550267 CCDC26Q8TAB7 109 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 SH3RF2Q8TEC5 729 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 FNBP1Q96RU3 617 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 ARHGAP9Q9BRR9 750 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 TMEM206Q9H813 350 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 DPP3Q9NY33 737 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 LARSQ9P2J5 1176 aaKnown RBP11.28□□□□□ -0.6
VPS29-208ENST00000550267 UXTQ9UBK9 157 aaPredicted RBP11.28□□□□□ -0.6
VPS29-208ENST00000550267 MBD1Q9UIS9 605 aaPredicted RBP11.28□□□□□ -0.6
VPS29-208ENST00000550267 DERAQ9Y315 318 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 ATG2BQ96BY7 2078 aa11.28□□□□□ -0.6
VPS29-208ENST00000550267 OBSL1O75147 1896 aa11.27□□□□□ -0.6
VPS29-208ENST00000550267 IGF2RP11717 2491 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 SLC35F4A4IF30 521 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 C2orf78A6NCI8 922 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 KPNA7A9QM74 516 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 H0YCG3 227 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 CAPNS1P04632 268 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 PLA2G4BP0C869 781 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 CYP2F1P24903 491 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 ACOT2P49753 483 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 TSPY1Q01534 308 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 DHX9Q08211 1270 aaKnown RBP11.27□□□□□ -0.61
VPS29-208ENST00000550267 GAB4Q2WGN9 574 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 SOWAHCQ53LP3 525 aaPredicted RBP11.27□□□□□ -0.61
VPS29-208ENST00000550267 ARSHQ5FYA8 562 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 HYIQ5T013 277 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 DTHD1Q6ZMT9 781 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 PROSER1Q86XN7 944 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 SYT12Q8IV01 421 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 CCDC83Q8IWF9 413 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 SFTPA1Q8IWL2 248 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 TMEM151AQ8N4L1 468 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 FBXO18Q8NFZ0 1043 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 TRMT2BQ96GJ1 504 aaKnown RBP11.27□□□□□ -0.61
VPS29-208ENST00000550267 KCTD15Q96SI1 283 aaPredicted RBP11.27□□□□□ -0.61
VPS29-208ENST00000550267 GTPBP2Q9BX10 602 aaKnown RBP11.27□□□□□ -0.61
VPS29-208ENST00000550267 CCSER1Q9C0I3 900 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 GCNT4Q9P109 453 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 FKBPLQ9UIM3 349 aa11.27□□□□□ -0.61
VPS29-208ENST00000550267 NUP205Q92621 2012 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 ANK1P16157 1881 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 FAM221BA6H8Z2 402 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 UPK3BL1B0FP48 263 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 TISP43B9A030 160 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 ANKRD63C9JTQ0 380 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 UPK3BL2E5RIL1 263 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 H0Y626 953 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 K7ENM7 598 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 RNF225M0QZC1 329 aaPredicted RBP11.26□□□□□ -0.61
VPS29-208ENST00000550267 SGK1O00141 431 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 ALDH1A2O94788 518 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 TRIM16O95361 564 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 KLF8O95600 359 aaPredicted RBP11.26□□□□□ -0.61
VPS29-208ENST00000550267 NFATC1O95644 943 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 CFIP05156 583 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 ACAT1P24752 427 aaKnown RBP11.26□□□□□ -0.61
VPS29-208ENST00000550267 PRPHP41219 470 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 NEK4P51957 841 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 RPL10AP62906 217 aaKnown RBP11.26□□□□□ -0.61
VPS29-208ENST00000550267 MRPS21P82921 87 aaKnown RBP11.26□□□□□ -0.61
VPS29-208ENST00000550267 MESP2Q0VG99 397 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 NFE2Q16621 373 aaPredicted RBP11.26□□□□□ -0.61
VPS29-208ENST00000550267 CCDC142Q17RM4 750 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 SV2CQ496J9 727 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 LYSMD4Q5XG99 296 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 SLC23A3Q6PIS1 610 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 HDDC3Q8N4P3 179 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 ALLCQ8N6M5 410 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 TXNDC5Q8NBS9 432 aaKnown RBP11.26□□□□□ -0.61
VPS29-208ENST00000550267 WHAMMQ8TF30 809 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 LRRC15Q8TF66 581 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 LEO1Q8WVC0 666 aaPredicted RBP11.26□□□□□ -0.61
VPS29-208ENST00000550267 KCNN1Q92952 543 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 SPACA7Q96KW9 195 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 MYRFLQ96LU7 910 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 REEP2Q9BRK0 252 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 ASB7Q9H672 318 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 ZDHHC4Q9NPG8 344 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 KCND2Q9NZV8 630 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 BCCIPQ9P287 314 aaKnown RBP eCLIP11.26□□□□□ -0.61
VPS29-208ENST00000550267 C2CD2Q9Y426 696 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 GPSM3Q9Y4H4 160 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 DENND4CQ5VZ89 1909 aa11.26□□□□□ -0.61
VPS29-208ENST00000550267 ZFYVE26Q68DK2 2539 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms