RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ASB3Q9Y575 518 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 DOCK6Q96HP0 2047 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 C2orf16Q68DN1 1984 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 PIK3R2O00459 728 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 NTHL1P78549 312 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 GRASPQ7Z6J2 395 aaPredicted RBP22.36■■□□□ 1.17
VPS29-206ENST00000549578 GPR149Q86SP6 731 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 TMEM35BQ8NCS4 154 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 HLA-CQ95604 372 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 UBXN6Q9BZV1 441 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 ADAM7Q9H2U9 754 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 ZNF334Q9HCZ1 680 aaPredicted RBP22.36■■□□□ 1.17
VPS29-206ENST00000549578 ST7Q9NRC1 585 aa22.36■■□□□ 1.17
VPS29-206ENST00000549578 DNMT3BQ9UBC3 853 aaKnown RBP22.36■■□□□ 1.17
VPS29-206ENST00000549578 BZW2Q9Y6E2 419 aaKnown RBP22.36■■□□□ 1.17
VPS29-206ENST00000549578 SPTBN5Q9NRC6 3674 aaKnown RBP22.36■■□□□ 1.17
VPS29-206ENST00000549578 COL6A3P12111 3177 aa22.35■■□□□ 1.17
VPS29-206ENST00000549578 GABBR2O75899 941 aa22.35■■□□□ 1.17
VPS29-206ENST00000549578 LSM8O95777 96 aaKnown RBP22.35■■□□□ 1.17
VPS29-206ENST00000549578 POU2F2P09086 479 aa22.35■■□□□ 1.17
VPS29-206ENST00000549578 TNFAIP3P21580 790 aa22.35■■□□□ 1.17
VPS29-206ENST00000549578 CDH5P33151 784 aaPredicted RBP22.35■■□□□ 1.17
VPS29-206ENST00000549578 NOMO3P69849 1222 aa22.35■■□□□ 1.17
VPS29-206ENST00000549578 PDCLQ13371 301 aa22.35■■□□□ 1.17
VPS29-206ENST00000549578 NAA35Q5VZE5 725 aa22.35■■□□□ 1.17
VPS29-206ENST00000549578 CPA5Q8WXQ8 436 aa22.35■■□□□ 1.17
VPS29-206ENST00000549578 CD207Q9UJ71 328 aa22.35■■□□□ 1.17
VPS29-206ENST00000549578 CYP1A1P04798 512 aaPredicted RBP22.34■■□□□ 1.17
VPS29-206ENST00000549578 PTPN2P17706 415 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 KIF11P52732 1056 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 ITIH3Q06033 890 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 ADIGQ0VDE8 80 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 RAB41Q5JT25 222 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 TRIM72Q6ZMU5 477 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 TMC8Q8IU68 726 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 SMRP1Q8NCR6 262 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 KCTD13Q8WZ19 329 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 CPXM1Q96SM3 734 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 CHP1Q99653 195 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 LRRC3Q9BY71 257 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 LRRC4Q9HBW1 653 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 PRDM6Q9NQX0 595 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 ASAH2Q9NR71 780 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 TJP2Q9UDY2 1190 aa22.34■■□□□ 1.17
VPS29-206ENST00000549578 GOLGA6L6A8MZA4 724 aa22.33■■□□□ 1.17
VPS29-206ENST00000549578 DDX3XO00571 662 aaKnown RBP eCLIP22.33■■□□□ 1.171e-8■■□□□ 11.8
VPS29-206ENST00000549578 RTN3O95197 1032 aaPredicted RBP22.33■■□□□ 1.17
VPS29-206ENST00000549578 RHOP08100 348 aa22.33■■□□□ 1.17
VPS29-206ENST00000549578 LCP1P13796 627 aa22.33■■□□□ 1.17
VPS29-206ENST00000549578 EIF4A3P38919 411 aaKnown RBP22.33■■□□□ 1.17
VPS29-206ENST00000549578 TKTL1P51854 596 aa22.33■■□□□ 1.17
VPS29-206ENST00000549578 CLEC16AQ2KHT3 1053 aa22.33■■□□□ 1.17
VPS29-206ENST00000549578 CES5AQ6NT32 575 aa22.33■■□□□ 1.17
VPS29-206ENST00000549578 STK32AQ8WU08 396 aa22.33■■□□□ 1.17
VPS29-206ENST00000549578 ANP32BQ92688 251 aaKnown RBP22.33■■□□□ 1.17
VPS29-206ENST00000549578 HSFY1Q96LI6 401 aa22.33■■□□□ 1.17
VPS29-206ENST00000549578 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.33■■□□□ 1.17
VPS29-206ENST00000549578 TTLL2Q9BWV7 592 aa22.33■■□□□ 1.17
VPS29-206ENST00000549578 SLC4A5Q9BY07 1137 aa22.33■■□□□ 1.17
VPS29-206ENST00000549578 ZNF638Q14966 1978 aaKnown RBP22.32■■□□□ 1.16
VPS29-206ENST00000549578 MYL4P12829 197 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 UNGP13051 313 aaPredicted RBP22.32■■□□□ 1.16
VPS29-206ENST00000549578 YWHAQP27348 245 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 PTPN20Q4JDL3 420 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 PABPC1LQ4VXU2 614 aaKnown RBP22.32■■□□□ 1.16
VPS29-206ENST00000549578 CYP26C1Q6V0L0 522 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 SLC30A5Q8TAD4 765 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 TRMT2BQ96GJ1 504 aaKnown RBP22.32■■□□□ 1.16
VPS29-206ENST00000549578 PPP1R13BQ96KQ4 1090 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 MYRFLQ96LU7 910 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 NOX5Q96PH1 765 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 PANX2Q96RD6 677 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 ULBP1Q9BZM6 244 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 IL37Q9NZH6 218 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 ADAMTS1Q9UHI8 967 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 NOTCH4Q99466 2003 aa22.32■■□□□ 1.16
VPS29-206ENST00000549578 E5RJQ4 531 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 NRG2O14511 850 aaPredicted RBP22.31■■□□□ 1.16
VPS29-206ENST00000549578 USP17L7P0C7H9 530 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 CCR2P41597 374 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 RPL34P49207 117 aaKnown RBP22.31■■□□□ 1.16
VPS29-206ENST00000549578 TAF10Q12962 218 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 SLC5A9Q2M3M2 681 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 ATAT1Q5SQI0 421 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 SIX6OS1Q8N1H7 587 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 FBXO32Q969P5 355 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 FBXO44Q9H4M3 255 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 IL21Q9HBE4 155 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 TAS2R14Q9NYV8 317 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 EHD2Q9NZN4 543 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 USP3Q9Y6I4 520 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 C5orf42Q9H799 3197 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 MYO16Q9Y6X6 1858 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 TMCO5BA8MYB1 307 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 ERBB2P04626 1255 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 GABRR2P28476 465 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 EPHA5P54756 1037 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 C2CD6Q53TS8 623 aa22.31■■□□□ 1.16
VPS29-206ENST00000549578 PDZD4Q76G19 769 aaPredicted RBP22.31■■□□□ 1.16
VPS29-206ENST00000549578 CCDC186Q7Z3E2 898 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms