RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 ANKS4BQ8N8V4 417 aa19.4■□□□□ 0.7
PRPF40B-208ENST00000548436 FAM71DQ8N9W8 422 aa19.4■□□□□ 0.7
PRPF40B-208ENST00000548436 SNX27Q96L92 541 aa19.4■□□□□ 0.7
PRPF40B-208ENST00000548436 RSAD1Q9HA92 442 aa19.4■□□□□ 0.7
PRPF40B-208ENST00000548436 RNF19AQ9NV58 838 aa19.4■□□□□ 0.7
PRPF40B-208ENST00000548436 CLEC11AQ9Y240 323 aa19.4■□□□□ 0.7
PRPF40B-208ENST00000548436 CCT8L1PA6NM43 557 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 GPX6P59796 221 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 ZBTB6Q15916 424 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 LACTB2Q53H82 288 aaPredicted RBP19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 TRABD2AQ86V40 505 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 CNPY4Q8N129 248 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 SPATA18Q8TC71 538 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 C18orf25Q96B23 403 aaPredicted RBP19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 NSRP1Q9H0G5 558 aaKnown RBP19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 KDM4CQ9H3R0 1056 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 PLEKHA5Q9HAU0 1116 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 FGFR1OP2Q9NVK5 253 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 CLUHO75153 1309 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 DCAF8L1A6NGE4 600 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 SNX3O60493 162 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 RBP3P10745 1247 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 DPYSL3Q14195 570 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 CCDC14Q49A88 953 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 IQSEC1Q6DN90 963 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 SLC27A1Q6PCB7 646 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 CATSPER4Q7RTX7 472 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 WDR83Q9BRX9 315 aaKnown RBP19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 ACTR5Q9H9F9 607 aaPredicted RBP19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 FAM49BQ9NUQ9 324 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 DERAQ9Y315 318 aa19.39■□□□□ 0.69
PRPF40B-208ENST00000548436 UNCXA6NJT0 531 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 H0YHG0 523 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 MCF2LO15068 1137 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 ATP2C2O75185 946 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 GABBR2O75899 941 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 OAS1P00973 400 aaKnown RBP19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 ATP11AP98196 1134 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 STILQ15468 1287 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 GLRA4Q5JXX5 417 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 OLFML1Q6UWY5 402 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 KHSRPQ92945 711 aaKnown RBP eCLIP19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 OSMRQ99650 979 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 LPIN3Q9BQK8 851 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 GCOM2Q9BZD3 368 aaPredicted RBP19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 GJD2Q9UKL4 321 aa19.38■□□□□ 0.69
PRPF40B-208ENST00000548436 RRN3P2A6NIE6 340 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 TMEM63AO94886 807 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 STX2P32856 288 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 PKN2Q16513 984 aaKnown RBP19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 NUGGCQ68CJ6 796 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 ARHGEF18Q6ZSZ5 1173 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 PLEKHH3Q7Z736 793 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 P3H4Q92791 437 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 PTPN18Q99952 460 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 MAK16Q9BXY0 300 aaKnown RBP19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 MIS12Q9H081 205 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 KIF9Q9HAQ2 790 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 UBN1Q9NPG3 1134 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 PRPSAP2O60256 369 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 SPAG7O75391 227 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 SMIM10L2AP0DMW4 78 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 SMIM10L2BP0DMW5 78 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 SCTRP47872 440 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 ARL4CP56559 192 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 MTM1Q13496 603 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 NOMO1Q15155 1222 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 PRAMEF19Q5SWL8 479 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 FAM182AQ5T1J6 154 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 ZC3H18Q86VM9 953 aaKnown RBP19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 SCUBE3Q8IX30 993 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 SLC35F5Q8WV83 523 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 MRRFQ96E11 262 aaKnown RBP19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 SLC4A5Q9BY07 1137 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 NXF3Q9H4D5 531 aaKnown RBP19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 TMEM51Q9NW97 253 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 NKIRAS1Q9NYS0 192 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 RABGEF1Q9UJ41 708 aa19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 ZMYND8Q9ULU4 1186 aaPredicted RBP19.37■□□□□ 0.69
PRPF40B-208ENST00000548436 IQCA1LA6NCM1 817 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 DYNC1LI2O43237 492 aaPredicted RBP19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 HCRTO43612 131 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 ECM2O94769 699 aaPredicted RBP19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 IL4RP24394 825 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 SSTR1P30872 391 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 WDR4P57081 412 aaKnown RBP19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 NR1H3Q13133 447 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 HIC1Q14526 733 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 ALKAL1Q6UXT8 129 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 PNMA8AQ86V59 439 aaPredicted RBP19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 PYROXD1Q8WU10 500 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 MAGEB18Q96M61 343 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 RNF157Q96PX1 679 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 TGS1Q96RS0 853 aaKnown RBP19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 PHACTR1Q9C0D0 580 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 DPEP3Q9H4B8 488 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 GPATCH2LQ9NWQ4 482 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 FAM47DPA6NHR8 397 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 E7ESA3 106 aa19.36■□□□□ 0.69
PRPF40B-208ENST00000548436 DPYSL4O14531 572 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms