RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 RNF43Q68DV7 783 aa15.31■□□□□ 0.04
HOXC11-202ENST00000546378 GADL1Q6ZQY3 521 aa15.31■□□□□ 0.04
HOXC11-202ENST00000546378 TRIM50Q86XT4 487 aa15.31■□□□□ 0.04
HOXC11-202ENST00000546378 NDUFAF2Q8N183 169 aa15.31■□□□□ 0.04
HOXC11-202ENST00000546378 MAB21L3Q8N8X9 362 aa15.31■□□□□ 0.04
HOXC11-202ENST00000546378 MRPL47Q9HD33 250 aaKnown RBP15.31■□□□□ 0.04
HOXC11-202ENST00000546378 PRKAG3Q9UGI9 489 aa15.31■□□□□ 0.04
HOXC11-202ENST00000546378 PGAP2Q9UHJ9 254 aa15.31■□□□□ 0.04
HOXC11-202ENST00000546378 CORO1CQ9ULV4 474 aaPredicted RBP15.31■□□□□ 0.04
HOXC11-202ENST00000546378 RIPK3Q9Y572 518 aa15.31■□□□□ 0.04
HOXC11-202ENST00000546378 A6NJR5 290 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 SRRM3A6NNA2 597 aaPredicted RBP15.3■□□□□ 0.04
HOXC11-202ENST00000546378 OR6B1O95007 311 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 ATP6V1C1P21283 382 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 TRIP10Q15642 601 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 CCNG2Q16589 344 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 NXNQ6DKJ4 435 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 IYDQ6PHW0 289 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 RHBDF2Q6PJF5 856 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 FAM160B2Q86V87 743 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 MTBPQ96DY7 904 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 MARK4Q96L34 752 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 AGAP3Q96P47 875 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 LRMDAQ9H2I8 198 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 DCLRE1BQ9H816 532 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 LAMA2P24043 3122 aaKnown RBP15.3■□□□□ 0.04
HOXC11-202ENST00000546378 INO80B-WBP1J3KQ70 363 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 PSMG1O95456 288 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 FSTL1Q12841 308 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 CLUL1Q15846 466 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 PAOXQ6QHF9 649 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 RBM15BQ8NDT2 890 aaKnown RBP15.3■□□□□ 0.04
HOXC11-202ENST00000546378 CEP70Q8NHQ1 597 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 BTBD10Q9BSF8 475 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 INO80BQ9C086 356 aaPredicted RBP15.3■□□□□ 0.04
HOXC11-202ENST00000546378 APPL1Q9UKG1 709 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 CSADQ9Y600 493 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 LTBP3Q9NS15 1303 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 DNAJC6O75061 913 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 PHBP35232 272 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 RPL22P35268 128 aaKnown RBP15.3■□□□□ 0.04
HOXC11-202ENST00000546378 BACE1P56817 501 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 KRT81Q14533 505 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 ZRSR2Q15696 482 aaKnown RBP15.3■□□□□ 0.04
HOXC11-202ENST00000546378 USP37Q86T82 979 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 ZCCHC9Q8N567 271 aaKnown RBP15.3■□□□□ 0.04
HOXC11-202ENST00000546378 SNX31Q8N9S9 440 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 ASAP3Q8TDY4 903 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 TRAPPC12Q8WVT3 735 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 DDX1Q92499 740 aaKnown RBP15.3■□□□□ 0.04
HOXC11-202ENST00000546378 CLMNQ96JQ2 1002 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 FAM81BQ96LP2 452 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 SLITRK1Q96PX8 696 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 TUBGCP5Q96RT8 1024 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 C17orf75Q9HAS0 396 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 PPM1HQ9ULR3 514 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 MYPNQ86TC9 1320 aa15.3■□□□□ 0.04
HOXC11-202ENST00000546378 RGPD3A6NKT7 1758 aaPredicted RBP15.29■□□□□ 0.04
HOXC11-202ENST00000546378 RGPD4Q7Z3J3 1758 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 DCAF8L1A6NGE4 600 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 ZNF862O60290 1169 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 KRT3P12035 628 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 GRIA1P42261 906 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 CUL2Q13617 745 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 OR6B2Q6IFH4 312 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 RIPOR1Q6ZS17 1223 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 SDCCAG8Q86SQ7 713 aaPredicted RBP15.29■□□□□ 0.04
HOXC11-202ENST00000546378 TREML1Q86YW5 311 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 ATP11CQ8NB49 1132 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 MAGEC3Q8TD91 643 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 ANLNQ9NQW6 1124 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 FAM49BQ9NUQ9 324 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 MT-CO1P00395 513 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 C6orf222P0C671 652 aaPredicted RBP15.29■□□□□ 0.04
HOXC11-202ENST00000546378 PRKCEQ02156 737 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 BST1Q10588 318 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 FAM102AQ5T9C2 384 aaPredicted RBP15.29■□□□□ 0.04
HOXC11-202ENST00000546378 MAIP1Q8WWC4 291 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 GCNAQ96QF7 691 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 MOV10L1Q9BXT6 1211 aaKnown RBP15.29■□□□□ 0.04
HOXC11-202ENST00000546378 VPS11Q9H270 941 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 STAU2Q9NUL3 570 aaKnown RBP eCLIP15.29■□□□□ 0.04
HOXC11-202ENST00000546378 NDE1Q9NXR1 346 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 LNPEPQ9UIQ6 1025 aa15.29■□□□□ 0.04
HOXC11-202ENST00000546378 CLUHO75153 1309 aa15.28■□□□□ 0.04
HOXC11-202ENST00000546378 CXorf49A8MYA2 514 aaPredicted RBP15.28■□□□□ 0.04
HOXC11-202ENST00000546378 WDR46O15213 610 aaKnown RBP15.28■□□□□ 0.04
HOXC11-202ENST00000546378 GRIN3BO60391 1043 aa15.28■□□□□ 0.04
HOXC11-202ENST00000546378 ANXA13P27216 316 aa15.28■□□□□ 0.04
HOXC11-202ENST00000546378 CIITAP33076 1130 aa15.28■□□□□ 0.04
HOXC11-202ENST00000546378 ASPHQ12797 758 aa15.28■□□□□ 0.04
HOXC11-202ENST00000546378 OLIG2Q13516 323 aa15.28■□□□□ 0.04
HOXC11-202ENST00000546378 LAMB3Q13751 1172 aa15.28■□□□□ 0.04
HOXC11-202ENST00000546378 SNRNP48Q6IEG0 339 aaKnown RBP15.28■□□□□ 0.04
HOXC11-202ENST00000546378 KDELC2Q7Z4H8 507 aa15.28■□□□□ 0.04
HOXC11-202ENST00000546378 SH3TC2Q8TF17 1288 aa15.28■□□□□ 0.04
HOXC11-202ENST00000546378 SRPK1Q96SB4 655 aaKnown RBP15.28■□□□□ 0.04
HOXC11-202ENST00000546378 AS3MTQ9HBK9 375 aa15.28■□□□□ 0.04
HOXC11-202ENST00000546378 ADARB2Q9NS39 739 aaKnown RBP15.28■□□□□ 0.04
HOXC11-202ENST00000546378 PARVAQ9NVD7 372 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms