RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 TRUB2O95900 331 aaKnown RBP16.51■□□□□ 0.23
LDLR-204ENST00000545707 APOC2P02655 101 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 TPBGLP0DKB5 382 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 TROVE2P10155 538 aaKnown RBP eCLIP16.51■□□□□ 0.23
LDLR-204ENST00000545707 CDH6P55285 790 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 SLC8A3P57103 927 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 TAZQ16635 292 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 FAM102AQ5T9C2 384 aaPredicted RBP16.51■□□□□ 0.23
LDLR-204ENST00000545707 ATF7IP2Q5U623 682 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 FAM160B1Q5W0V3 765 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 ZBTB8OSQ8IWT0 167 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 DNERQ8NFT8 737 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 CNKSR2Q8WXI2 1034 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 TSSK1BQ9BXA7 367 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.51■□□□□ 0.23
LDLR-204ENST00000545707 GPATCH2LQ9NWQ4 482 aa16.51■□□□□ 0.23
LDLR-204ENST00000545707 M0QYV0 167 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 WFS1O76024 890 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 MICAL2O94851 1124 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 IQCF3P0C7M6 154 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 PTPN4P29074 926 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 SERPINB3P29508 390 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 ABL2P42684 1182 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 GRM1Q13255 1194 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 ZNF667Q5HYK9 610 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 IER5Q5VY09 327 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 TRNP1Q6NT89 227 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 MPZL3Q6UWV2 235 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 CDHR3Q6ZTQ4 885 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 TTC7BQ86TV6 843 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 NCAPG2Q86XI2 1143 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 C1orf127Q8N9H9 656 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 CMASQ8NFW8 434 aaPredicted RBP16.5■□□□□ 0.23
LDLR-204ENST00000545707 STK32AQ8WU08 396 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 KLRG1Q96E93 195 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 CYTH2Q99418 400 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 TRIM56Q9BRZ2 755 aaKnown RBP16.5■□□□□ 0.23
LDLR-204ENST00000545707 SSU72Q9NP77 194 aaKnown RBP16.5■□□□□ 0.23
LDLR-204ENST00000545707 EFR3BQ9Y2G0 817 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 H7C0C1 242 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 RNF8O76064 485 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 ITGB3P05106 788 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 ATP5OP48047 213 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 CLCN3P51790 818 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 CDCA2Q69YH5 1023 aaPredicted RBP16.5■□□□□ 0.23
LDLR-204ENST00000545707 CADM1Q9BY67 442 aaKnown RBP16.5■□□□□ 0.23
LDLR-204ENST00000545707 LHX5Q9H2C1 402 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 PPCSQ9HAB8 311 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 KCNK13Q9HB14 408 aa16.5■□□□□ 0.23
LDLR-204ENST00000545707 SESN3P58005 492 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 ZNF200P98182 395 aaPredicted RBP16.49■□□□□ 0.23
LDLR-204ENST00000545707 ROR1Q01973 937 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 PTPN11Q06124 597 aaPredicted RBP16.49■□□□□ 0.23
LDLR-204ENST00000545707 DSTYKQ6XUX3 929 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 CTAGE3PQ8IX95 158 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 CCDC33Q8N5R6 958 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 FAF2Q96CS3 445 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 ADPGKQ9BRR6 497 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 MECRQ9BV79 373 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 TMEM120AQ9BXJ8 343 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 VPS11Q9H270 941 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 RAB6BQ9NRW1 208 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 HEY1Q9Y5J3 304 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 IKBKGQ9Y6K9 419 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 LCTP09848 1927 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 CXorf49A8MYA2 514 aaPredicted RBP16.49■□□□□ 0.23
LDLR-204ENST00000545707 E5RJQ4 531 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 TM9SF1O15321 606 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 MED7O43513 233 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 PGK2P07205 417 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 INHBAP08476 426 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 RASSF2P50749 326 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 ARFIP2P53365 341 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 ZBTB16Q05516 673 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 KHDC1Q4VXA5 237 aaKnown RBP16.49■□□□□ 0.23
LDLR-204ENST00000545707 MICAL1Q8TDZ2 1067 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 NAF1Q96HR8 494 aaKnown RBP16.49■□□□□ 0.23
LDLR-204ENST00000545707 HEXIM2Q96MH2 286 aaKnown RBP16.49■□□□□ 0.23
LDLR-204ENST00000545707 TRIM55Q9BYV6 548 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 CDT1Q9H211 546 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 ZNF395Q9H8N7 513 aaPredicted RBP16.49■□□□□ 0.23
LDLR-204ENST00000545707 PTPRHQ9HD43 1115 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 FETUBQ9UGM5 382 aa16.49■□□□□ 0.23
LDLR-204ENST00000545707 LACTBL1A8MY62 500 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 GPR25O00155 361 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 UGT1A9O60656 530 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 ETV4P43268 484 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 MAP1SQ66K74 1059 aaPredicted RBP16.48■□□□□ 0.23
LDLR-204ENST00000545707 SCYL2Q6P3W7 929 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 PPM1NQ8N819 430 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 FNIP1Q8TF40 1166 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 COPS5Q92905 334 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 UGT1A7Q9HAW7 530 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 UGT1A10Q9HAW8 530 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 UGT1A8Q9HAW9 530 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 ARMCX1Q9P291 453 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 TEX264Q9Y6I9 313 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 NDC80O14777 642 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 B4GALT4O60513 344 aa16.48■□□□□ 0.23
LDLR-204ENST00000545707 PROZP22891 400 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms