RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	PHF13	Q86YI8	300 aa	Predicted RBP	12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	NUP93	Q8N1F7	819 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	HDAC7	Q8WUI4	952 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	SLC35F5	Q8WV83	523 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	KCTD13	Q8WZ19	329 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	GOLGA1	Q92805	767 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	CASP10	Q92851	521 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	C18orf8	Q96DM3	657 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	LRCH3	Q96II8	777 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	SPATA17	Q96L03	361 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	FAM161B	Q96MY7	647 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	KCNK16	Q96T55	309 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	TTYH1	Q9H313	450 aa	Predicted RBP	12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	FBXO44	Q9H4M3	255 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	IGFLR1	Q9H665	355 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	WDR35	Q9P2L0	1181 aa		12.53	□□□□□ -0.4
DDB1-223	ENST00000543658	ANKRD62	A6NC57	917 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658		E5RJQ4	531 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	TULP2	O00295	520 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	PIK3R2	O00459	728 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	SOX1	O00570	391 aa	Predicted RBP	12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	SART1	O43290	800 aa	Known RBP	12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	CCP110	O43303	1012 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	XYLB	O75191	536 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	LCA5L	O95447	670 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	VNN2	O95498	520 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	DES	P17661	470 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	GPR15	P49685	360 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	TKTL1	P51854	596 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	CACNA2D1	P54289	1103 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	GRIN2C	Q14957	1233 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	TCEAL5	Q5H9L2	206 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	SDHAF4	Q5VUM1	108 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	ZDHHC17	Q8IUH5	632 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	MICALL1	Q8N3F8	863 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	ACRBP	Q8NEB7	543 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	ZMIZ2	Q8NF64	920 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	GIPC2	Q8TF65	315 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	VCPIP1	Q96JH7	1222 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	ZNF512	Q96ME7	567 aa	Predicted RBP	12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	CPXM1	Q96SM3	734 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	DESI2	Q9BSY9	194 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	SELENOO	Q9BVL4	669 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	ISCU	Q9H1K1	167 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	CRISPLD1	Q9H336	500 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	KCNF1	Q9H3M0	494 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	DZANK1	Q9NVP4	752 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	COMMD8	Q9NX08	183 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	TAS2R14	Q9NYV8	317 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	MYO1A	Q9UBC5	1043 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	UXT	Q9UBK9	157 aa	Predicted RBP	12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	MAGED2	Q9UNF1	606 aa	Predicted RBP	12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	ASB3	Q9Y575	518 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	PCDHA13	Q9Y5I0	950 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	HCFC2	Q9Y5Z7	792 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	SCIN	Q9Y6U3	715 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	C2orf16	Q68DN1	1984 aa		12.52	□□□□□ -0.41
DDB1-223	ENST00000543658	ANAPC1	Q9H1A4	1944 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	SLC38A8	A6NNN8	435 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	GOLGA8S	H3BPF8	625 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	ZSCAN12	O43309	604 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	ZMYND10	O75800	440 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	ERBB2	P04626	1255 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	EPCAM	P16422	314 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	ATF6	P18850	670 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	MMP8	P22894	467 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	YWHAQ	P27348	245 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	HOXA9	P31269	272 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	DEK	P35659	375 aa	Known RBP	12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	VAV2	P52735	878 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	GALC	P54803	685 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	GPC5	P78333	572 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	HS1BP3	Q53T59	392 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	FAM102A	Q5T9C2	384 aa	Predicted RBP	12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	CYP4A22	Q5TCH4	519 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	GPR153	Q6NV75	609 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	DNAJC24	Q6P3W2	148 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	LILRA6	Q6PI73	481 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	EP400NL	Q6ZTU2	488 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	MON1B	Q7L1V2	547 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	MCOLN2	Q8IZK6	566 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	WDTC1	Q8N5D0	677 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	GPR152	Q8TDT2	470 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	SLC22A17	Q8WUG5	538 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	FBXO32	Q969P5	355 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	FAM149B1	Q96BN6	582 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	SLITRK1	Q96PX8	696 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	GCNA	Q96QF7	691 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	TRIM62	Q9BVG3	475 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	SLC4A5	Q9BY07	1137 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	ULBP1	Q9BZM6	244 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	TSGA10	Q9BZW7	698 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	SFXN1	Q9H9B4	322 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	MRPL47	Q9HD33	250 aa	Known RBP	12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	CNGB3	Q9NQW8	809 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	ZDHHC7	Q9NXF8	308 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	CNOT8	Q9UFF9	292 aa	Known RBP	12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	CYTH4	Q9UIA0	394 aa		12.51	□□□□□ -0.41
DDB1-223	ENST00000543658	INTU	Q9ULD6	942 aa		12.51	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 24 ms