RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NMRK2Q9NPI5 230 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 INTS9Q9NV88 658 aaKnown RBP17.09■□□□□ 0.33
COL4A1-204ENST00000543140 PDCD11Q14690 1871 aaKnown RBP17.09■□□□□ 0.33
COL4A1-204ENST00000543140 KPNA7A9QM74 516 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 PAPSS1O43252 624 aaPredicted RBP17.09■□□□□ 0.33
COL4A1-204ENST00000543140 CTCFP49711 727 aaPredicted RBP17.09■□□□□ 0.33
COL4A1-204ENST00000543140 EIF3EP60228 445 aaKnown RBP17.09■□□□□ 0.33
COL4A1-204ENST00000543140 STILQ15468 1287 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 UBXN11Q5T124 520 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 TAOK1Q7L7X3 1001 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 ZC3H18Q86VM9 953 aaKnown RBP17.09■□□□□ 0.33
COL4A1-204ENST00000543140 FAM71DQ8N9W8 422 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 TTC13Q8NBP0 860 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 ARRDC4Q8NCT1 418 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 SPATA18Q8TC71 538 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 MGARPQ8TDB4 240 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 CLEC4CQ8WTT0 213 aa17.09■□□□□ 0.33
COL4A1-204ENST00000543140 PRMT1Q99873 361 aaKnown RBP17.09■□□□□ 0.33
COL4A1-204ENST00000543140 C17orf102A2RUQ5 167 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 SRRM3A6NNA2 597 aaPredicted RBP17.08■□□□□ 0.33
COL4A1-204ENST00000543140 PIRO00625 290 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 GNL1P36915 607 aaPredicted RBP17.08■□□□□ 0.33
COL4A1-204ENST00000543140 SLC6A3Q01959 620 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 ADCY1Q08828 1119 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 SF3A3Q12874 501 aaKnown RBP eCLIP17.08■□□□□ 0.33
COL4A1-204ENST00000543140 MORF4L2Q15014 288 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 FSCN1Q16658 493 aaKnown RBP17.08■□□□□ 0.33
COL4A1-204ENST00000543140 ZC3H12AQ5D1E8 599 aaKnown RBP17.08■□□□□ 0.33
COL4A1-204ENST00000543140 ZBED8Q8IZ13 594 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 FAM172AQ8WUF8 416 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 KBTBD7Q8WVZ9 684 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 ATXN2LQ8WWM7 1075 aaKnown RBP17.08■□□□□ 0.33
COL4A1-204ENST00000543140 USP6NLQ92738 828 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 KHSRPQ92945 711 aaKnown RBP eCLIP17.08■□□□□ 0.33
COL4A1-204ENST00000543140 SLC4A5Q9BY07 1137 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 FAM124BQ9H5Z6 455 aaPredicted RBP17.08■□□□□ 0.33
COL4A1-204ENST00000543140 RSAD1Q9HA92 442 aa17.08■□□□□ 0.33
COL4A1-204ENST00000543140 MYADML2A6NDP7 307 aa17.08■□□□□ 0.32
COL4A1-204ENST00000543140 APOC4-APOC2K7ER74 178 aa17.08■□□□□ 0.32
COL4A1-204ENST00000543140 APOC2P02655 101 aa17.08■□□□□ 0.32
COL4A1-204ENST00000543140 TFE3P19532 575 aaPredicted RBP17.08■□□□□ 0.32
COL4A1-204ENST00000543140 LRRC14Q15048 493 aa17.08■□□□□ 0.32
COL4A1-204ENST00000543140 PCBP1Q15365 356 aaKnown RBP eCLIP17.08■□□□□ 0.32
COL4A1-204ENST00000543140 ANKRD22Q5VYY1 191 aa17.08■□□□□ 0.32
COL4A1-204ENST00000543140 CPLX4Q7Z7G2 160 aa17.08■□□□□ 0.32
COL4A1-204ENST00000543140 RELL1Q8IUW5 271 aa17.08■□□□□ 0.32
COL4A1-204ENST00000543140 PRCCQ92733 491 aaPredicted RBP17.08■□□□□ 0.32
COL4A1-204ENST00000543140 IPPQ9Y573 584 aa17.08■□□□□ 0.32
COL4A1-204ENST00000543140 RBP3P10745 1247 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 AXLP30530 894 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 RPL22P35268 128 aaKnown RBP17.07■□□□□ 0.32
COL4A1-204ENST00000543140 RGS2P41220 211 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 CORO7P57737 925 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 PDIA2Q13087 525 aaKnown RBP17.07■□□□□ 0.32
COL4A1-204ENST00000543140 DPYSL3Q14195 570 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 KRT81Q14533 505 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 TWF2Q6IBS0 349 aaKnown RBP17.07■□□□□ 0.32
COL4A1-204ENST00000543140 C1orf228Q6PIY5 440 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 C17orf99Q6UX52 265 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 TMEM110Q86TL2 294 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 ANKMY2Q8IV38 441 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 CENPTQ96BT3 561 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 MLXIPLQ9NP71 852 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 KCNK9Q9NPC2 374 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 DDX20Q9UHI6 824 aaKnown RBP17.07■□□□□ 0.32
COL4A1-204ENST00000543140 NAALADL1Q9UQQ1 740 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 CEP350Q5VT06 3117 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 TNPO2O14787 897 aaKnown RBP17.07■□□□□ 0.32
COL4A1-204ENST00000543140 MAP3K6O95382 1288 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 CD4P01730 458 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 C6orf222P0C671 652 aaPredicted RBP17.07■□□□□ 0.32
COL4A1-204ENST00000543140 LCP1P13796 627 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 SDC4P31431 198 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 CRYBB1P53674 252 aaPredicted RBP17.07■□□□□ 0.32
COL4A1-204ENST00000543140 CCDC142Q17RM4 750 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 SYCP2LQ5T4T6 812 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 UNC93AQ86WB7 457 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 SMG8Q8ND04 991 aaKnown RBP17.07■□□□□ 0.32
COL4A1-204ENST00000543140 MRRFQ96E11 262 aaKnown RBP17.07■□□□□ 0.32
COL4A1-204ENST00000543140 CHMP6Q96FZ7 201 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 CCDC77Q9BR77 488 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 FOXP3Q9BZS1 431 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 SNX25Q9H3E2 840 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 VPS37BQ9H9H4 285 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 CACNG4Q9UBN1 327 aa17.07■□□□□ 0.32
COL4A1-204ENST00000543140 TMEM120BA0PK00 339 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 MANSC4A6NHS7 340 aaPredicted RBP17.06■□□□□ 0.32
COL4A1-204ENST00000543140 MCF2LO15068 1137 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 IGFBP6P24592 240 aaPredicted RBP17.06■□□□□ 0.32
COL4A1-204ENST00000543140 PURAQ00577 322 aaKnown RBP17.06■□□□□ 0.32
COL4A1-204ENST00000543140 CCDC13Q8IYE1 715 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 CPT1BQ92523 772 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 ZFP42Q96MM3 310 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 SHOC2Q9UQ13 582 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 EXOC1LA0A1B0GW35 172 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 CA9Q16790 459 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 DARS2Q6PI48 645 aaKnown RBP17.06■□□□□ 0.32
COL4A1-204ENST00000543140 SRRM1Q8IYB3 904 aaKnown RBP17.06■□□□□ 0.32
COL4A1-204ENST00000543140 ANKRD42Q8N9B4 389 aa17.06■□□□□ 0.32
COL4A1-204ENST00000543140 APPL2Q8NEU8 664 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms