RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 NEFLP07196 543 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 TMEM191BP0C7N4 346 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 GAP43P17677 238 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 ENGP17813 658 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 TIE1P35590 1138 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 GRIK1P39086 918 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 KIR2DL1P43626 348 aaPredicted RBP19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 MAPK8P45983 427 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 LMAN2Q12907 356 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 MAP7D1Q3KQU3 841 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 RHBDF2Q6PJF5 856 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 LPCAT2Q7L5N7 544 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 SYT12Q8IV01 421 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 KIAA1958Q8N8K9 716 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 OR5B17Q8NGF7 314 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 WHAMMQ8TF30 809 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 PCED1BQ96HM7 432 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 CEP295NLQ96MC4 621 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 NUSAP1Q9BXS6 441 aaKnown RBP19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 PCIF1Q9H4Z3 704 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 OLFML3Q9NRN5 406 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 INTS13Q9NVM9 706 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 STK17AQ9UEE5 414 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 CPQQ9Y646 472 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 PLXNB3Q9ULL4 1909 aa19.03■□□□□ 0.64
CLSTN3-214ENST00000542663 ATXN2Q99700 1313 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 OAS1P00973 400 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 EIF2DP41214 584 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 CYP27A1Q02318 531 aa19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 PEAR1Q5VY43 1037 aaPredicted RBP19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 SLC23A3Q6PIS1 610 aa19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 PIP4P1Q86T03 277 aa19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 PHTF2Q8N3S3 785 aa19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 ZCCHC14Q8WYQ9 949 aaKnown RBP19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 HPDLQ96IR7 371 aa19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 SPACA7Q96KW9 195 aa19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 TMEM30AQ9NV96 361 aa19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 SMPD4Q9NXE4 827 aa19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 KLK13Q9UKR3 277 aa19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 NEUROG3Q9Y4Z2 214 aa19.02■□□□□ 0.64
CLSTN3-214ENST00000542663 PTPRBP23467 1997 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 FRMD3A2A2Y4 597 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 APODP05090 189 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 PDGFRBP09619 1106 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 WARSP23381 471 aaKnown RBP19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 CACNA2D1P54289 1103 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 NOP14P78316 857 aaKnown RBP19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 KDSRQ06136 332 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 MYO1EQ12965 1108 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 RESTQ13127 1097 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 SEMA3BQ13214 749 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 HSF5Q4G112 596 aaPredicted RBP19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 BRAPQ7Z569 592 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 SYCP3Q8IZU3 236 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 GPD1LQ8N335 351 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 MYCBPAPQ8TBZ2 947 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 NOC3LQ8WTT2 800 aaKnown RBP19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 HMGB4Q8WW32 186 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 ANKRD36BP1Q96IX9 119 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 POLMQ9NP87 494 aaPredicted RBP19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 FSCN3Q9NQT6 498 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 CFAP97Q9P2B7 532 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 PILRBQ9UKJ0 227 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 CIZ1Q9ULV3 898 aaPredicted RBP19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 PCDHB13Q9Y5F0 798 aa19.01■□□□□ 0.63
CLSTN3-214ENST00000542663 SPAARA0A1B0GVQ0 90 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 F8VP50 259 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 SLC9A3R1O14745 358 aaPredicted RBP19■□□□□ 0.63
CLSTN3-214ENST00000542663 MAP3K13O43283 966 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 ITPKAP23677 461 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 ANXA13P27216 316 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 RABEP1Q15276 862 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 MAPRE1Q15691 268 aaKnown RBP19■□□□□ 0.63
CLSTN3-214ENST00000542663 C8orf34Q49A92 452 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 SPDYCQ5MJ68 293 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 EOGTQ5NDL2 527 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 LARP1BQ659C4 914 aaKnown RBP19■□□□□ 0.63
CLSTN3-214ENST00000542663 C8orf48Q96LL4 319 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 SLC32A1Q9H598 525 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 ARHGEF4Q9NR80 690 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 BCCIPQ9P287 314 aaKnown RBP eCLIP19■□□□□ 0.63
CLSTN3-214ENST00000542663 FBXO2Q9UK22 296 aaPredicted RBP19■□□□□ 0.63
CLSTN3-214ENST00000542663 MSRB2Q9Y3D2 182 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 CLIC4Q9Y696 253 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 ITPR1Q14643 2758 aa19■□□□□ 0.63
CLSTN3-214ENST00000542663 TCRBV21S2A2A0A5A6 115 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 UPK3BL1B0FP48 263 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 UPK3BL2E5RIL1 263 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 TRIM66O15016 1216 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 PRPF6O94906 941 aaKnown RBP18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 ADH5P11766 374 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 GRIA2P42262 883 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 PPP3CCP48454 512 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 RING1Q06587 406 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 TAF10Q12962 218 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 MDH1BQ5I0G3 518 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 LYSMD4Q5XG99 296 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 SV2BQ7L1I2 683 aa18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 ZFRQ96KR1 1074 aaKnown RBP18.99■□□□□ 0.63
CLSTN3-214ENST00000542663 MRPL45Q9BRJ2 306 aaKnown RBP18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms