RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 SART1O43290 800 aaKnown RBP18.63■□□□□ 0.57
CLIP1-215ENST00000541108 GLI1P08151 1106 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 PAFAH1B1P43034 410 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 MRPS5P82675 430 aaKnown RBP18.63■□□□□ 0.57
CLIP1-215ENST00000541108 ADIGQ0VDE8 80 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 PTPROQ16827 1216 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 DDX53Q86TM3 631 aaKnown RBP18.63■□□□□ 0.57
CLIP1-215ENST00000541108 RHOT1Q8IXI2 618 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 GPR65Q8IYL9 337 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 SCML4Q8N228 414 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 C2orf15Q8WU43 125 aaKnown RBP18.63■□□□□ 0.57
CLIP1-215ENST00000541108 B3GALT6Q96L58 329 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 RAD9AQ99638 391 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 CARD6Q9BX69 1037 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 TMEM30AQ9NV96 361 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 ASNSD1Q9NWL6 643 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 PCDHB5Q9Y5E4 795 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 PCDHB12Q9Y5F1 795 aa18.63■□□□□ 0.57
CLIP1-215ENST00000541108 PSTPIP1O43586 416 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 OR4Q2P0C623 313 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 GPD1P21695 349 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 PSMA2P25787 234 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 MAGEA11P43364 429 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 TKTL1P51854 596 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 CACNA2D1P54289 1103 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 TUBB4BP68371 445 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 CLUL1Q15846 466 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 LRRC38Q5VT99 294 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 SLC8B1Q6J4K2 584 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 KIAA1841Q6NSI8 718 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 ZNF572Q7Z3I7 529 aaPredicted RBP18.62■□□□□ 0.57
CLIP1-215ENST00000541108 HERC6Q8IVU3 1022 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 SIX6OS1Q8N1H7 587 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 FIBCD1Q8N539 461 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 ACTRT1Q8TDG2 376 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 DPF3Q92784 378 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 CLP1Q92989 425 aaKnown RBP18.62■□□□□ 0.57
CLIP1-215ENST00000541108 PIWIL1Q96J94 861 aaKnown RBP18.62■□□□□ 0.57
CLIP1-215ENST00000541108 PCDH10Q9P2E7 1040 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 MTRRQ9UBK8 725 aa18.62■□□□□ 0.57
CLIP1-215ENST00000541108 TTC7AQ9ULT0 858 aaPredicted RBP18.62■□□□□ 0.57
CLIP1-215ENST00000541108 F8VP50 259 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 PDGFRAP16234 1089 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 DESP17661 470 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 DNA2P51530 1060 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 RWDD2BP57060 319 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 DSG1Q02413 1049 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 ITIH3Q06033 890 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 ADCY1Q08828 1119 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 CCDC181Q5TID7 509 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 CC2D1AQ6P1N0 951 aaPredicted RBP18.61■□□□□ 0.57
CLIP1-215ENST00000541108 RASGEF1CQ8N431 466 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 EMC1Q8N766 993 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 FBXO22Q8NEZ5 403 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 SPPL2BQ8TCT7 592 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 SP7Q8TDD2 431 aaPredicted RBP18.61■□□□□ 0.57
CLIP1-215ENST00000541108 ALG3Q92685 438 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 KRT35Q92764 455 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 ABHD8Q96I13 439 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 CAPZA3Q96KX2 299 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 NCAPGQ9BPX3 1015 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 CNPY3Q9BT09 278 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 PLVAPQ9BX97 442 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 VN1R3Q9BXE9 311 aa18.61■□□□□ 0.57
CLIP1-215ENST00000541108 ZMYND8Q9ULU4 1186 aaPredicted RBP18.61■□□□□ 0.57
CLIP1-215ENST00000541108 CTAGE15A4D2H0 777 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 DPYSL4O14531 572 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 HSF2BPO75031 334 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 RNF8O76064 485 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 CTAGE8P0CG41 777 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 CYP2F1P24903 491 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 GTF2F1P35269 517 aaKnown RBP eCLIP18.6■□□□□ 0.57
CLIP1-215ENST00000541108 FLT3P36888 993 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 GRIK1P39086 918 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 RNASE9P60153 205 aaKnown RBP18.6■□□□□ 0.57
CLIP1-215ENST00000541108 PM20D1Q6GTS8 502 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 CTAGE6Q86UF2 777 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 CTAGE4Q8IX94 777 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 RXFP2Q8WXD0 754 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 RIN2Q8WYP3 895 aaPredicted RBP18.6■□□□□ 0.57
CLIP1-215ENST00000541108 C8orf48Q96LL4 319 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 HERC2P3Q9BVR0 1158 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 RHOBTB2Q9BYZ6 727 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 USP3Q9Y6I4 520 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 EFCAB8A8MWE9 144 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 TRIM66O15016 1216 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 LINC00271P0C7V0 271 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 CPB1P15086 417 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 ATP2A2P16615 1042 aaKnown RBP18.6■□□□□ 0.57
CLIP1-215ENST00000541108 SDC4P31431 198 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 PCK1P35558 622 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 PTPN9P43378 593 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 YWHAZP63104 245 aaKnown RBP18.6■□□□□ 0.57
CLIP1-215ENST00000541108 KRT17Q04695 432 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 TAF5Q15542 800 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 PSMD5Q16401 504 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 RASIP1Q5U651 963 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 RSPO2Q6UXX9 243 aaPredicted RBP18.6■□□□□ 0.57
CLIP1-215ENST00000541108 POLNQ7Z5Q5 900 aa18.6■□□□□ 0.57
CLIP1-215ENST00000541108 CLEC4CQ8WTT0 213 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms