RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 AP1G2O75843 785 aa15.05■□□□□ -0
USP28-209ENST00000540925 RTN3O95197 1032 aaPredicted RBP15.05■□□□□ -0
USP28-209ENST00000540925 USP17L7P0C7H9 530 aa15.05■□□□□ -0
USP28-209ENST00000540925 CD58P19256 250 aa15.05■□□□□ -0
USP28-209ENST00000540925 RPS9P46781 194 aaKnown RBP15.05■□□□□ -0
USP28-209ENST00000540925 SLC5A3P53794 718 aa15.05■□□□□ -0
USP28-209ENST00000540925 STX17P56962 302 aa15.05■□□□□ -0
USP28-209ENST00000540925 TAF10Q12962 218 aa15.05■□□□□ -0
USP28-209ENST00000540925 CLEC20AQ6ZU45 233 aa15.05■□□□□ -0
USP28-209ENST00000540925 YAF2Q8IY57 180 aa15.05■□□□□ -0
USP28-209ENST00000540925 TTC39CQ8N584 583 aa15.05■□□□□ -0
USP28-209ENST00000540925 ARL14EPQ8N8R7 260 aaPredicted RBP15.05■□□□□ -0
USP28-209ENST00000540925 SLC4A11Q8NBS3 891 aa15.05■□□□□ -0
USP28-209ENST00000540925 CCDC150Q8NCX0 1101 aa15.05■□□□□ -0
USP28-209ENST00000540925 SCAMP5Q8TAC9 235 aa15.05■□□□□ -0
USP28-209ENST00000540925 MSANTD3Q96H12 275 aa15.05■□□□□ -0
USP28-209ENST00000540925 HPS4Q9NQG7 708 aa15.05■□□□□ -0
USP28-209ENST00000540925 CISHQ9NSE2 258 aa15.05■□□□□ -0
USP28-209ENST00000540925 FAM49BQ9NUQ9 324 aa15.05■□□□□ -0
USP28-209ENST00000540925 COMMD8Q9NX08 183 aa15.05■□□□□ -0
USP28-209ENST00000540925 TRPM5Q9NZQ8 1165 aa15.05■□□□□ -0
USP28-209ENST00000540925 RWDD2AQ9UIY3 292 aa15.05■□□□□ -0
USP28-209ENST00000540925 ARHGAP26Q9UNA1 814 aa15.05■□□□□ -0
USP28-209ENST00000540925 WDR87Q6ZQQ6 2873 aa15.04■□□□□ -0
USP28-209ENST00000540925 SPTBN4Q9H254 2564 aa15.04■□□□□ -0
USP28-209ENST00000540925 TRAV19A0A0A6YYK7 116 aa15.04■□□□□ -0
USP28-209ENST00000540925 OTOL1A6NHN0 477 aaPredicted RBP15.04■□□□□ -0
USP28-209ENST00000540925 H0Y858 1186 aa15.04■□□□□ -0
USP28-209ENST00000540925 STK25O00506 426 aa15.04■□□□□ -0
USP28-209ENST00000540925 MAN2B1O00754 1011 aa15.04■□□□□ -0
USP28-209ENST00000540925 P4HA2O15460 535 aa15.04■□□□□ -0
USP28-209ENST00000540925 CLSTN1O94985 981 aa15.04■□□□□ -0
USP28-209ENST00000540925 GNA14O95837 355 aa15.04■□□□□ -0
USP28-209ENST00000540925 YWHAQP27348 245 aa15.04■□□□□ -0
USP28-209ENST00000540925 MAGEA9P43362 315 aa15.04■□□□□ -0
USP28-209ENST00000540925 RAD23BP54727 409 aa15.04■□□□□ -0
USP28-209ENST00000540925 SLC7A9P82251 487 aa15.04■□□□□ -0
USP28-209ENST00000540925 TNK2Q07912 1038 aa15.04■□□□□ -0
USP28-209ENST00000540925 MAML2Q8IZL2 1156 aaPredicted RBP15.04■□□□□ -0
USP28-209ENST00000540925 CYFIP2Q96F07 1278 aa15.04■□□□□ -0
USP28-209ENST00000540925 PHOX2BQ99453 314 aa15.04■□□□□ -0
USP28-209ENST00000540925 MED10Q9BTT4 135 aa15.04■□□□□ -0
USP28-209ENST00000540925 SRRTQ9BXP5 876 aaKnown RBP15.04■□□□□ -0
USP28-209ENST00000540925 RNF38Q9H0F5 515 aa15.04■□□□□ -0
USP28-209ENST00000540925 IRF2BPLQ9H1B7 796 aa15.04■□□□□ -0
USP28-209ENST00000540925 C8orf33Q9H7E9 229 aaPredicted RBP15.04■□□□□ -0
USP28-209ENST00000540925 TRPC7Q9HCX4 862 aa15.04■□□□□ -0
USP28-209ENST00000540925 PNPLA8Q9NP80 782 aa15.04■□□□□ -0
USP28-209ENST00000540925 GTSE1Q9NYZ3 720 aa15.04■□□□□ -0
USP28-209ENST00000540925 CACNA1IQ9P0X4 2223 aa15.03■□□□□ -0
USP28-209ENST00000540925 FAM200BP0CF97 657 aa15.03■□□□□ -0
USP28-209ENST00000540925 HDCP19113 662 aa15.03■□□□□ -0
USP28-209ENST00000540925 RFX1P22670 979 aa15.03■□□□□ -0
USP28-209ENST00000540925 CTHP32929 405 aa15.03■□□□□ -0
USP28-209ENST00000540925 SOX9P48436 509 aa15.03■□□□□ -0
USP28-209ENST00000540925 PGFP49763 221 aa15.03■□□□□ -0
USP28-209ENST00000540925 PDE6CP51160 858 aa15.03■□□□□ -0
USP28-209ENST00000540925 MAP3K7CLP57077 242 aa15.03■□□□□ -0
USP28-209ENST00000540925 CUL2Q13617 745 aa15.03■□□□□ -0
USP28-209ENST00000540925 UBXN2BQ14CS0 331 aa15.03■□□□□ -0
USP28-209ENST00000540925 ANGPT1Q15389 498 aa15.03■□□□□ -0
USP28-209ENST00000540925 CCDC40Q4G0X9 1142 aa15.03■□□□□ -0
USP28-209ENST00000540925 PPP1R26Q5T8A7 1209 aaPredicted RBP15.03■□□□□ -0
USP28-209ENST00000540925 ARHGAP17Q68EM7 881 aa15.03■□□□□ -0
USP28-209ENST00000540925 C1orf228Q6PIY5 440 aa15.03■□□□□ -0
USP28-209ENST00000540925 TXNDC11Q6PKC3 985 aa15.03■□□□□ -0
USP28-209ENST00000540925 GPRIN1Q7Z2K8 1008 aa15.03■□□□□ -0
USP28-209ENST00000540925 RALGPS2Q86X27 583 aaPredicted RBP15.03■□□□□ -0
USP28-209ENST00000540925 IRF2BP1Q8IU81 584 aa15.03■□□□□ -0
USP28-209ENST00000540925 KIAA1958Q8N8K9 716 aa15.03■□□□□ -0
USP28-209ENST00000540925 MLKLQ8NB16 471 aa15.03■□□□□ -0
USP28-209ENST00000540925 PDZD8Q8NEN9 1154 aa15.03■□□□□ -0
USP28-209ENST00000540925 CSGALNACT1Q8TDX6 532 aa15.03■□□□□ -0
USP28-209ENST00000540925 FAM3CQ92520 227 aa15.03■□□□□ -0
USP28-209ENST00000540925 TMEM176AQ96HP8 235 aa15.03■□□□□ -0
USP28-209ENST00000540925 SLITRK1Q96PX8 696 aa15.03■□□□□ -0
USP28-209ENST00000540925 GKN1Q9NS71 199 aa15.03■□□□□ -0
USP28-209ENST00000540925 THG1LQ9NWX6 298 aaKnown RBP15.03■□□□□ -0
USP28-209ENST00000540925 MRPS17Q9Y2R5 130 aaKnown RBP15.03■□□□□ -0
USP28-209ENST00000540925 SPECC1L-ADORA2AF8WAN1 911 aa15.02■□□□□ -0
USP28-209ENST00000540925 CKMP06732 381 aa15.02■□□□□ -0
USP28-209ENST00000540925 ACO1P21399 889 aaKnown RBP15.02■□□□□ -0
USP28-209ENST00000540925 TUBP50607 506 aa15.02■□□□□ -0
USP28-209ENST00000540925 MTF1Q14872 753 aa15.02■□□□□ -0
USP28-209ENST00000540925 ITPRIPL2Q3MIP1 535 aa15.02■□□□□ -0
USP28-209ENST00000540925 MAMSTRQ6ZN01 415 aa15.02■□□□□ -0
USP28-209ENST00000540925 C1orf210Q8IVY1 113 aa15.02■□□□□ -0
USP28-209ENST00000540925 SH3RF2Q8TEC5 729 aa15.02■□□□□ -0
USP28-209ENST00000540925 OSCP1Q8WVF1 389 aa15.02■□□□□ -0
USP28-209ENST00000540925 FBXO32Q969P5 355 aa15.02■□□□□ -0
USP28-209ENST00000540925 ZFRQ96KR1 1074 aaKnown RBP15.02■□□□□ -0
USP28-209ENST00000540925 DUSP16Q9BY84 665 aa15.02■□□□□ -0
USP28-209ENST00000540925 ZFHX2Q9C0A1 2572 aaPredicted RBP15.02□□□□□ -0.01
USP28-209ENST00000540925 PROB1E7EW31 1015 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 CHRNB1P11230 501 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 ARSAP15289 507 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 TBXAS1P24557 533 aaPredicted RBP15.01□□□□□ -0.01
USP28-209ENST00000540925 ADORA2BP29275 332 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 NBL1P41271 181 aa15.01□□□□□ -0.01
USP28-209ENST00000540925 KIF11P52732 1056 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms