RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 PPP1R12CQ9BZL4 782 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 UBN1Q9NPG3 1134 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 KRT82Q9NSB4 513 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 hCG_1818297A0A087WSY0 165 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 LRRD1A4D1F6 860 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 DPYSL4O14531 572 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 XPO1O14980 1071 aaKnown RBP12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 EOMESO95936 686 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 FAM163BP0C2L3 166 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 NPR3P17342 541 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 MCM3P25205 808 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 CHRNA3P32297 505 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 CYP2C18P33260 490 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 CDKN2BP42772 138 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 MAP3K7CLP57077 242 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 PITX1P78337 314 aaPredicted RBP12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 ADIGQ0VDE8 80 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 FAAP100Q0VG06 881 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 NOMO2Q5JPE7 1267 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 GLB1LQ6UWU2 654 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 PRUNE1Q86TP1 453 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 TMEM86AQ8N2M4 240 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 CCDC26Q8TAB7 109 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 UBE2Q2Q8WVN8 375 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 MYLPFQ96A32 169 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 CNPY3Q9BT09 278 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 MCOLN1Q9GZU1 580 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 LRRC19Q9H756 370 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 GPATCH2LQ9NWQ4 482 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 PCYOX1Q9UHG3 505 aa12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 PRG3Q9Y2Y8 225 aaPredicted RBP12.88□□□□□ -0.35
AP003559.1-201ENST00000540906 VWA8A3KMH1 1905 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 HHLA1C9JL84 531 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 H3BQF6 201 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 CYP11A1P05108 521 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 ODC1P11926 461 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 LHX1P48742 406 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 BCAR1P56945 870 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 TLE2Q04725 743 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 BFSP2Q13515 415 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 SMC1AQ14683 1233 aaKnown RBP12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 OTUD1Q5VV17 481 aaPredicted RBP12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 DUPD1Q68J44 220 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 FBXO46Q6PJ61 603 aaPredicted RBP12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 HFE2Q6ZVN8 426 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 HDXQ7Z353 690 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 RCOR2Q8IZ40 523 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 HAUS1Q96CS2 278 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 SUSD3Q96L08 255 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 C11orf84Q9BUA3 381 aaPredicted RBP12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 UBXN6Q9BZV1 441 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 CRISPLD2Q9H0B8 497 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 CDH9Q9ULB4 789 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 HPCAL4Q9UM19 191 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 USP18Q9UMW8 372 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 SNX24Q9Y343 169 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 PTPRDP23468 1912 aa12.87□□□□□ -0.35
AP003559.1-201ENST00000540906 PITPNM1O00562 1244 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 NRP1O14786 923 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 ATP8B1O43520 1251 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 AP1G2O75843 785 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 RPL21P46778 160 aaKnown RBP12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 HDAC4P56524 1084 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 PLCB3Q01970 1234 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 MMRN1Q13201 1228 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 CA9Q16790 459 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 ZFYVE27Q5T4F4 411 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 DCLRE1AQ6PJP8 1040 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 ZDHHC24Q6UX98 284 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 SLC26A9Q7LBE3 791 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 MAATS1Q7Z4T9 603 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 CRIPAKQ8N1N5 446 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 MYCBPAPQ8TBZ2 947 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 FAM172AQ8WUF8 416 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 HSPH1Q92598 858 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 RBM41Q96IZ5 413 aaKnown RBP12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 CASD1Q96PB1 797 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 PRDM10Q9NQV6 1147 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 TMEM161AQ9NX61 479 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 GRHL1Q9NZI5 618 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 MTUS1Q9ULD2 1270 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 TTC3P53804 2025 aa12.86□□□□□ -0.35
AP003559.1-201ENST00000540906 FAM187AA6NFU0 413 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 OR4Q2P0C623 313 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 FAM200BP0CF97 657 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 KDELR1P24390 212 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 OR1G1P47890 313 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 FNTAP49354 379 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 ARSEP51690 589 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 EPHB4P54760 987 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 CBX1P83916 185 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 DHX34Q14147 1143 aaKnown RBP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 CLUL1Q15846 466 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 TAZQ16635 292 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 ZC3H12AQ5D1E8 599 aaKnown RBP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 INTS6LQ5JSJ4 861 aaKnown RBP12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 FAM182AQ5T1J6 154 aa12.85□□□□□ -0.35
AP003559.1-201ENST00000540906 COL13A1Q5TAT6 717 aaPredicted RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms