RNA–Protein interactions for RNA: ENST00000540846.6

SMAD3-204, Transcript of SMAD family member 3, humanhuman

TSL 1 (best) BASIC

Gene SMAD3, Length 1,567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-204ENST00000540846 PSTPIP1O43586 416 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 CA3P07451 260 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 GLI1P08151 1106 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 PDGFRBP09619 1106 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 MYBL2P10244 700 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 PYGMP11217 842 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 ACAT1P24752 427 aaKnown RBP13.13□□□□□ -0.31
SMAD3-204ENST00000540846 PPM1AP35813 382 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 PBX2P40425 430 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 YWHAHQ04917 246 aaPredicted RBP13.13□□□□□ -0.31
SMAD3-204ENST00000540846 VARS2Q5ST30 1063 aaKnown RBP13.13□□□□□ -0.31
SMAD3-204ENST00000540846 SPOUT1Q5T280 376 aaKnown RBP13.13□□□□□ -0.31
SMAD3-204ENST00000540846 OVOS1Q6IE37 1185 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 LCLAT1Q6UWP7 414 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 HDXQ7Z353 690 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 DDX53Q86TM3 631 aaKnown RBP13.13□□□□□ -0.31
SMAD3-204ENST00000540846 IFT20Q8IY31 132 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 NIPA2Q8N8Q9 360 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 C12orf29Q8N999 325 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 TMEM209Q96SK2 561 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 C17orf80Q9BSJ5 609 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 PLVAPQ9BX97 442 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 DDX47Q9H0S4 455 aaKnown RBP13.13□□□□□ -0.31
SMAD3-204ENST00000540846 SNX25Q9H3E2 840 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 WDR35Q9P2L0 1181 aa13.13□□□□□ -0.31
SMAD3-204ENST00000540846 ARHGEF37A1IGU5 675 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 M0QYV0 167 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 FGF18O76093 207 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 GJB6O95452 261 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 SOD2P04179 222 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 BMPR1AP36894 532 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 PSMC1P62191 440 aaKnown RBP13.12□□□□□ -0.31
SMAD3-204ENST00000540846 RPL7AP62424 266 aaKnown RBP13.12□□□□□ -0.31
SMAD3-204ENST00000540846 MRPS25P82663 173 aaKnown RBP13.12□□□□□ -0.31
SMAD3-204ENST00000540846 PLCB3Q01970 1234 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 ZNF252P-AS1Q0IIN9 211 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 PDCLQ13371 301 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 AADACL2Q6P093 401 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 RSPO2Q6UXX9 243 aaPredicted RBP13.12□□□□□ -0.31
SMAD3-204ENST00000540846 SLC13A5Q86YT5 568 aaPredicted RBP13.12□□□□□ -0.31
SMAD3-204ENST00000540846 TDHQ8IZJ6 230 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 KLHL23Q8NBE8 558 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 B3GALNT2Q8NCR0 500 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 PIK3R5Q8WYR1 880 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 TMEM169Q96HH4 297 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 CPXM1Q96SM3 734 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 SYT15Q9BQS2 421 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 ACBD6Q9BR61 282 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 HERC2P3Q9BVR0 1158 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 PBX4Q9BYU1 374 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMAD3-204ENST00000540846 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMAD3-204ENST00000540846 NR2E1Q9Y466 385 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 PCDHB12Q9Y5F1 795 aa13.12□□□□□ -0.31
SMAD3-204ENST00000540846 PTPN1P18031 435 aaKnown RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 GPD2P43304 727 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 GABRB2P47870 512 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 DSG1Q02413 1049 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 GUCY2DQ02846 1103 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 PKDCCQ504Y2 493 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 INTS6LQ5JSJ4 861 aaKnown RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 CYP4A22Q5TCH4 519 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 ARHGAP17Q68EM7 881 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 FAM171BQ6P995 826 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 PAQR9Q6ZVX9 377 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 MAATS1Q7Z4T9 603 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 LRRTM3Q86VH5 581 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 RHOT1Q8IXI2 618 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 GSPT2Q8IYD1 628 aaKnown RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 EIF1ADQ8N9N8 165 aaKnown RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 FNIP1Q8TF40 1166 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 C18orf8Q96DM3 657 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 HEXIM2Q96MH2 286 aaKnown RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 MCEEQ96PE7 176 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 TTPALQ9BTX7 342 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 AAASQ9NRG9 546 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 TMLHEQ9NVH6 421 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 TSPAN16Q9UKR8 245 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 CDH9Q9ULB4 789 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 PLXNA3P51805 1871 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 CDH23Q9H251 3354 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 MYBPHLA2RUH7 354 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 ZSCAN5CA6NGD5 496 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 SIGLEC16A6NMB1 481 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 LILRB3O75022 631 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 PHF2O75151 1096 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 CAPN15O75808 1086 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 ERBB2P04626 1255 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 SETSIPP0DME0 302 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 CCDC130P13994 396 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 PCSK1P29120 753 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 CTNNB1P35222 781 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 TAS2R40P59535 323 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 PIGHQ14442 188 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 ZNF268Q14587 947 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 CASP8Q14790 479 aa13.11□□□□□ -0.31
SMAD3-204ENST00000540846 SIX1Q15475 284 aaPredicted RBP13.11□□□□□ -0.31
SMAD3-204ENST00000540846 CYP1B1Q16678 543 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms