RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 PHKG1Q16816 387 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 PPP2R2DQ66LE6 453 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 IYDQ6PHW0 289 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 FASTKD5Q7L8L6 764 aaKnown RBP9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 GSTCDQ8NEC7 633 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 SHKBP1Q8TBC3 707 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 TSG101Q99816 390 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 CCDC77Q9BR77 488 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 WDR18Q9BV38 432 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 TMEM120AQ9BXJ8 343 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 PAIP1Q9H074 479 aaKnown RBP9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 RETREG1Q9H6L5 497 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 ELP3Q9H9T3 547 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 WHRNQ9P202 907 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 SMG5Q9UPR3 1016 aaKnown RBP9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 CSADQ9Y600 493 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 ATAD5Q96QE3 1844 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 IGSF9BQ9UPX0 1349 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 TCRBV7S2A1N4TA0A589 114 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 C2orf71A6NGG8 1288 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 CAPN8A6NHC0 703 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 DNAJA2O60884 412 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 ENO1P06733 434 aaKnown RBP9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 PTPN2P17706 415 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 SLC5A3P53794 718 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 NUP107P57740 925 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 SNAP25P60880 206 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 ATP1A4Q13733 1029 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 STAT4Q14765 748 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 LRRC41Q15345 812 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 GRAMD1BQ3KR37 738 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 DCLRE1AQ6PJP8 1040 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 LVRNQ6Q4G3 990 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 ANKRD13AQ8IZ07 590 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 SIX5Q8N196 739 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 POU5F2Q8N7G0 328 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 TRPC4APQ8TEL6 797 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 RFFLQ8WZ73 363 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 PWWP2AQ96N64 755 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 MAK16Q9BXY0 300 aaKnown RBP9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 C17orf75Q9HAS0 396 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 KCNK13Q9HB14 408 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 MAN1C1Q9NR34 630 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 FBXO28Q9NVF7 368 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 MTO1Q9Y2Z2 717 aaKnown RBP9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 AFG3L2Q9Y4W6 797 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 NCANO14594 1321 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 FRMPD4Q14CM0 1322 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 WDR91A4D1P6 747 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 BAIAP3O94812 1187 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 FBXO21O94952 628 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 TCEA1P23193 301 aaKnown RBP9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 DSG3P32926 999 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 KCNC4Q03721 635 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 KCNJ8Q15842 424 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 USP41Q3LFD5 358 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 OGFOD2Q6N063 350 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 KYAT3Q6YP21 454 aaKnown RBP9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 LPCAT2Q7L5N7 544 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 HEATR3Q7Z4Q2 680 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 VPS36Q86VN1 386 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 PPM1KQ8N3J5 372 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 BORCS5Q969J3 196 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 PLEKHA8Q96JA3 519 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 RBM15Q96T37 977 aaKnown RBP eCLIP9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 NMUR2Q9GZQ4 415 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 EHD1Q9H4M9 534 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 AS3MTQ9HBK9 375 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 GID8Q9NWU2 228 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 NOTOA8MTQ0 251 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 TMEM114B3SHH9 223 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 AQP9O43315 295 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 ZBTB11O95625 1053 aaPredicted RBP9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 APOEP02649 317 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 ATXN8OSP0DMR3 200 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 MARCKSL1P49006 195 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 HSD17B4P51659 736 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 HMGCS2P54868 508 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 FKBP3Q00688 224 aaKnown RBP9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 GK3PQ14409 553 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 PSMD6Q15008 389 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 PKN2Q16513 984 aaKnown RBP9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 CYP1B1Q16678 543 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 NDUFA5Q16718 116 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 ITPRIPL1Q6GPH6 555 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 TRIM59Q8IWR1 403 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 CXorf38Q8TB03 319 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 SLC26A7Q8TE54 656 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 CHPT1Q8WUD6 406 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 PTCD2Q8WV60 388 aaKnown RBP9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 KRT35Q92764 455 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 COA7Q96BR5 231 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 EFHD2Q96C19 240 aaPredicted RBP9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 OXNAD1Q96HP4 312 aaPredicted RBP9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 KIAA1586Q9HCI6 787 aa9.87□□□□□ -0.83
CTNNA1-243ENST00000540387 PFDN6O15212 129 aa9.86□□□□□ -0.83
CTNNA1-243ENST00000540387 PEX1O43933 1283 aa9.86□□□□□ -0.83
CTNNA1-243ENST00000540387 FOXD2O60548 495 aaPredicted RBP9.86□□□□□ -0.83
CTNNA1-243ENST00000540387 PPP1R11O60927 126 aaPredicted RBP9.86□□□□□ -0.83
CTNNA1-243ENST00000540387 CELF2O95319 508 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms