RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 SLC14A1Q13336 389 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 TRIP6Q15654 476 aaKnown RBP12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 CCDC142Q17RM4 750 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 VSTM1Q6UX27 236 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 C4orf50Q6ZRC1 276 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 OSTM1Q86WC4 334 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 DEFB119Q8N690 84 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 CSGALNACT2Q8N6G5 542 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 TOP6BLQ8N6T0 577 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 C1orf127Q8N9H9 656 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 CXorf38Q8TB03 319 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 KCNV2Q8TDN2 545 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 AK8Q96MA6 479 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 BLOC1S4Q9NUP1 217 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 DNAAF2Q9NVR5 837 aaKnown RBP12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 EHD2Q9NZN4 543 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 MAGEC2Q9UBF1 373 aaPredicted RBP12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 SNX9Q9Y5X1 595 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 ADAMTS9Q9P2N4 1935 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 PLXND1Q9Y4D7 1925 aa12.44□□□□□ -0.42
CLSTN3-209ENST00000539982 HELZP42694 1942 aaKnown RBP12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 TULP1O00294 542 aaPredicted RBP12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 HCRTO43612 131 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 ATP2C2O75185 946 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 OLFM2O95897 454 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 ADH1CP00326 375 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 SYPP08247 313 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 PLCG1P19174 1290 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 GRIK1P39086 918 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 UBA7P41226 1012 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 USP46P62068 366 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 RBP5P82980 135 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 MCM6Q14566 821 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 SOWAHAQ2M3V2 549 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 COL28A1Q2UY09 1125 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 SCARA3Q6AZY7 606 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 DENND5BQ6ZUT9 1274 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 DPH6Q7L8W6 267 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 ZNF720Q7Z2F6 126 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 C12orf40Q86WS4 652 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 ADGRF2Q8IZF7 708 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 ADAMTS14Q8WXS8 1223 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 FAM213AQ9BRX8 229 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 IKZF4Q9H2S9 585 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 CCDC86Q9H6F5 360 aaKnown RBP12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 ZDHHC4Q9NPG8 344 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 TBC1D14Q9P2M4 693 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 ITGA11Q9UKX5 1188 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 PCDHB9Q9Y5E1 797 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 CPQQ9Y646 472 aa12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 SETXQ7Z333 2677 aaKnown RBP12.43□□□□□ -0.42
CLSTN3-209ENST00000539982 A0A1W2PQD8 194 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 TBC1D3BA6NDS4 549 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 SH3BP5O60239 455 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 ADH5P11766 374 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 BDNFP23560 247 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 WNT7BP56706 349 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 MAPRE1Q15691 268 aaKnown RBP12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 MCTP1Q6DN14 999 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 CCNI2Q6ZMN8 369 aaPredicted RBP12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 TRMT11Q7Z4G4 463 aaKnown RBP12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 PHTF2Q8N3S3 785 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 OR2I1PQ8NGU4 316 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 RAD54LQ92698 747 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 HVCN1Q96D96 273 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 CAMK1GQ96NX5 476 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 TTLL2Q9BWV7 592 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 SMPD4Q9NXE4 827 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 CFAP97Q9P2B7 532 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 CDH9Q9ULB4 789 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 CEP192Q8TEP8 1941 aa12.42□□□□□ -0.42
CLSTN3-209ENST00000539982 PCDH15Q96QU1 1955 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 SCAMP3O14828 347 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 EIF5BO60841 1220 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 ZNF217O75362 1048 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 GJB3O75712 270 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 LDHAP00338 332 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 ABL1P00519 1130 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 OAS1P00973 400 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 KRT19P08727 400 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 FTH1P19P0C7X4 201 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 GABRG2P18507 467 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 LMO2P25791 158 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 ANXA13P27216 316 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 DDIT3P35638 169 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 NOP14P78316 857 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 GAD2Q05329 585 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 KDSRQ06136 332 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 PREPLQ4J6C6 727 aaPredicted RBP12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 LY6G5CQ5SRR4 150 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 NUDT18Q6ZVK8 323 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 LIMS2Q7Z4I7 341 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 DDX42Q86XP3 938 aaKnown RBP eCLIP12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 BRSK2Q8IWQ3 736 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 ZNF513Q8N8E2 541 aaPredicted RBP12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 PNPLA1Q8N8W4 532 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 MYLPFQ96A32 169 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 SYT15Q9BQS2 421 aa12.41□□□□□ -0.42
CLSTN3-209ENST00000539982 STRA6Q9BX79 667 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms