RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 ID4P47928 161 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 GALK1P51570 392 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 FAM35AQ86V20 835 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 UNC93AQ86WB7 457 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 CCDC150Q8NCX0 1101 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 PDZD8Q8NEN9 1154 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 FBXO32Q969P5 355 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 SMARCD1Q96GM5 515 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 KCNK16Q96T55 309 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 P2RY13Q9BPV8 354 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 MMRN2Q9H8L6 949 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 DMAP1Q9NPF5 467 aaPredicted RBP16.4■□□□□ 0.22
CPSF1-211ENST00000533492 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.4■□□□□ 0.221e-7■■■□□ 15.5
CPSF1-211ENST00000533492 TMEM30AQ9NV96 361 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 RMND1Q9NWS8 449 aa16.4■□□□□ 0.22
CPSF1-211ENST00000533492 SPTBN4Q9H254 2564 aa16.39■□□□□ 0.22
CPSF1-211ENST00000533492 OTOGLQ3ZCN5 2332 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 CHURC1-FNTBB4DL54 471 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 LEFTY2O00292 366 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 AP1G2O75843 785 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 PAPSS2O95340 614 aaPredicted RBP16.39■□□□□ 0.21
CPSF1-211ENST00000533492 NFATC1O95644 943 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 TRIM49P0CI25 452 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 TRIM49CP0CI26 452 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 GCLMP48507 274 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 FNTBP49356 437 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 NDST1P52848 882 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 SLC7A9P82251 487 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 EML3Q32P44 896 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 C1orf220Q5T0J3 134 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 HEATR6Q6AI08 1181 aaKnown RBP16.39■□□□□ 0.21
CPSF1-211ENST00000533492 SPOPLQ6IQ16 392 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 FSTL4Q6MZW2 842 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 PRR23BQ6ZRT6 265 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 LONP2Q86WA8 852 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 CRYBG2Q8N1P7 616 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 CHFRQ96EP1 664 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 RNF38Q9H0F5 515 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 LINC00597Q9H2U6 94 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 CHORDC1Q9UHD1 332 aaPredicted RBP16.39■□□□□ 0.21
CPSF1-211ENST00000533492 GMEB2Q9UKD1 530 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 CPQQ9Y646 472 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 ATG2BQ96BY7 2078 aa16.39■□□□□ 0.21
CPSF1-211ENST00000533492 ZNF292O60281 2723 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 K7ESF4 209 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 CETN3O15182 167 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 EGFP01133 1207 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 MBL2P11226 248 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-211ENST00000533492 CNR2P34972 360 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 ENPEPQ07075 957 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 ORC1Q13415 861 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 PNOCQ13519 176 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 EDRF1Q3B7T1 1238 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 FBXO43Q4G163 708 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 PAQR9Q6ZVX9 377 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 SMYD4Q8IYR2 804 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-211ENST00000533492 FUKQ8N0W3 1084 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 GPR161Q8N6U8 529 aaKnown RBP16.38■□□□□ 0.21
CPSF1-211ENST00000533492 SLC2A14Q8TDB8 520 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 OVCA2Q8WZ82 227 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 CD101Q93033 1021 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 DNAI2Q9GZS0 605 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 FBRSL1Q9HCM7 1045 aaKnown RBP16.38■□□□□ 0.21
CPSF1-211ENST00000533492 KRT82Q9NSB4 513 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 SMPD4Q9NXE4 827 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 SLC8A2Q9UPR5 921 aa16.38■□□□□ 0.21
CPSF1-211ENST00000533492 MYH10P35580 1976 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 SLC9A3R1O14745 358 aaPredicted RBP16.37■□□□□ 0.21
CPSF1-211ENST00000533492 RNF40O75150 1001 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 SMC2O95347 1197 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 OAS1P00973 400 aaKnown RBP16.37■□□□□ 0.21
CPSF1-211ENST00000533492 CCDC130P13994 396 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 ASPAP45381 313 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 SLC5A3P53794 718 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 ZXDBP98169 803 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 PPP3CAQ08209 521 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 DMWDQ09019 674 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 SIM2Q14190 667 aaPredicted RBP16.37■□□□□ 0.21
CPSF1-211ENST00000533492 LPAL2Q16609 132 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 DDX42Q86XP3 938 aaKnown RBP eCLIP16.37■□□□□ 0.21
CPSF1-211ENST00000533492 FMR1NBQ8N0W7 255 aaPredicted RBP16.37■□□□□ 0.21
CPSF1-211ENST00000533492 SCAMP5Q8TAC9 235 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 TAS1R2Q8TE23 839 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 CYP3A43Q9HB55 503 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 TMEM8AQ9HCN3 771 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 FAM49BQ9NUQ9 324 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 C2orf42Q9NWW7 574 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 COMMD8Q9NX08 183 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 HOOK1Q9UJC3 728 aaKnown RBP16.37■□□□□ 0.21
CPSF1-211ENST00000533492 GPR179Q6PRD1 2367 aa16.37■□□□□ 0.21
CPSF1-211ENST00000533492 TNFRSF10BO14763 440 aa16.36■□□□□ 0.21
CPSF1-211ENST00000533492 HRO43593 1189 aa16.36■□□□□ 0.21
CPSF1-211ENST00000533492 STX10O60499 249 aa16.36■□□□□ 0.21
CPSF1-211ENST00000533492 OLFM2O95897 454 aa16.36■□□□□ 0.21
CPSF1-211ENST00000533492 FAM200BP0CF97 657 aa16.36■□□□□ 0.21
CPSF1-211ENST00000533492 EPB41P11171 864 aaKnown RBP16.36■□□□□ 0.21
CPSF1-211ENST00000533492 ADORA2BP29275 332 aa16.36■□□□□ 0.21
CPSF1-211ENST00000533492 HOXA6P31267 233 aa16.36■□□□□ 0.21
CPSF1-211ENST00000533492 GTF2H1P32780 548 aa16.36■□□□□ 0.21
CPSF1-211ENST00000533492 MAP3K7CLP57077 242 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms