RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 APEX2Q9UBZ4 518 aa21.01■□□□□ 0.95
CPSF1-209ENST00000532725 CHORDC1Q9UHD1 332 aaPredicted RBP21.01■□□□□ 0.95
CPSF1-209ENST00000532725 DENND4CQ5VZ89 1909 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 C2orf78A6NCI8 922 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 PRR33A8MZF0 331 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 PRAMEF12O95522 483 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 CFHP08603 1231 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 ZNF18P17022 549 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 MFAP3P55082 362 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 SKOR2Q2VWA4 1001 aaPredicted RBP21■□□□□ 0.95
CPSF1-209ENST00000532725 GPRIN1Q7Z2K8 1008 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 OVCA2Q8WZ82 227 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 FAM81BQ96LP2 452 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 SLITRK1Q96PX8 696 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 SLC22A12Q96S37 553 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 ZSWIM1Q9BR11 485 aa21■□□□□ 0.95
CPSF1-209ENST00000532725 SMG9Q9H0W8 520 aaKnown RBP21■□□□□ 0.95
CPSF1-209ENST00000532725 SYCE3A1L190 88 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 O00370 1275 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 CD19P15391 556 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 AVPR1AP37288 418 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 IFRD2Q12894 506 aaPredicted RBP20.99■□□□□ 0.95
CPSF1-209ENST00000532725 GRM2Q14416 872 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 SNX30Q5VWJ9 437 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 HFE2Q6ZVN8 426 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 TTC30AQ86WT1 665 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 RBBP8NLQ8NC74 664 aaPredicted RBP20.99■□□□□ 0.95
CPSF1-209ENST00000532725 DEPDC1BQ8WUY9 529 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 USP13Q92995 863 aaPredicted RBP20.99■□□□□ 0.95
CPSF1-209ENST00000532725 FBXO32Q969P5 355 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 TRMT61BQ9BVS5 477 aaKnown RBP20.99■□□□□ 0.95
CPSF1-209ENST00000532725 VPS16Q9H269 839 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 FBXO44Q9H4M3 255 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 LIMA1Q9UHB6 759 aaKnown RBP20.99■□□□□ 0.95
CPSF1-209ENST00000532725 TSPAN16Q9UKR8 245 aa20.99■□□□□ 0.95
CPSF1-209ENST00000532725 ZNF638Q14966 1978 aaKnown RBP20.98■□□□□ 0.95
CPSF1-209ENST00000532725 ZDHHC11BP0C7U3 371 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 PFKLP17858 780 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 HDCP19113 662 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 KIF11P52732 1056 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 FCHO2Q0JRZ9 810 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 ZNF268Q14587 947 aaPredicted RBP20.98■□□□□ 0.95
CPSF1-209ENST00000532725 CNGA2Q16280 664 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 PKDCCQ504Y2 493 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 IER5LQ5T953 404 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 SMYD5Q6GMV2 418 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 LCLAT1Q6UWP7 414 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 DHX40Q8IX18 779 aaKnown RBP20.98■□□□□ 0.95
CPSF1-209ENST00000532725 AOPEPQ8N6M6 819 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 CELF5Q8N6W0 485 aaKnown RBP20.98■□□□□ 0.95
CPSF1-209ENST00000532725 ARL14EPQ8N8R7 260 aaPredicted RBP20.98■□□□□ 0.95
CPSF1-209ENST00000532725 PBXIP1Q96AQ6 731 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 RNF38Q9H0F5 515 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 TRPC7Q9HCX4 862 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 TDP1Q9NUW8 608 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 CCL26Q9Y258 94 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 USP3Q9Y6I4 520 aa20.98■□□□□ 0.95
CPSF1-209ENST00000532725 TRAV19A0A0A6YYK7 116 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 KRBA1A5PL33 1030 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 PES1O00541 588 aaKnown RBP20.97■□□□□ 0.95
CPSF1-209ENST00000532725 DPYSL4O14531 572 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 PDGFBP01127 241 aaPredicted RBP20.97■□□□□ 0.95
CPSF1-209ENST00000532725 CALCAP01258 141 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 PGFP49763 221 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 ARHGAP44Q17R89 818 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 GOLGA7BQ2TAP0 167 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 PIGZQ86VD9 579 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 PDZD8Q8NEN9 1154 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 DNAJC12Q9UKB3 198 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 AJAP1Q9UKB5 411 aaPredicted RBP20.97■□□□□ 0.95
CPSF1-209ENST00000532725 FBXL21Q9UKT6 434 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 SCML2Q9UQR0 700 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 ANAPC1Q9H1A4 1944 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 MYH10P35580 1976 aa20.97■□□□□ 0.95
CPSF1-209ENST00000532725 OBSL1O75147 1896 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 BECN2A8MW95 431 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 TULP2O00295 520 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 OLFM2O95897 454 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 ABL1P00519 1130 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 OAS1P00973 400 aaKnown RBP20.96■□□□□ 0.95
CPSF1-209ENST00000532725 USP17L7P0C7H9 530 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 KRT5P13647 590 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 CDK11BP21127 795 aaKnown RBP20.96■□□□□ 0.95
CPSF1-209ENST00000532725 BRD2P25440 801 aaKnown RBP20.96■□□□□ 0.95
CPSF1-209ENST00000532725 GDI1P31150 447 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 ZNF165P49910 485 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 COPB1P53618 953 aaKnown RBP20.96■□□□□ 0.95
CPSF1-209ENST00000532725 PFKPQ01813 784 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 PDE4CQ08493 712 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 SLC44A4Q53GD3 710 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 RAB41Q5JT25 222 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 KLHDC7AQ5VTJ3 777 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 APTXQ7Z2E3 356 aaKnown RBP20.96■□□□□ 0.95
CPSF1-209ENST00000532725 UBA3Q8TBC4 463 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 BPIFB1Q8TDL5 484 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 SHC3Q92529 594 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 BRD9Q9H8M2 597 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 TRPV5Q9NQA5 729 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 GMIPQ9P107 970 aa20.96■□□□□ 0.95
CPSF1-209ENST00000532725 HESX1Q9UBX0 185 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms