RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 FLYWCH1Q4VC44 716 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 Q7L0L9 218 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 TTC7BQ86TV6 843 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 ADGRG5Q8IZF4 528 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 CFAP52Q8N1V2 620 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 TMIEQ8NEW7 156 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 SLC30A5Q8TAD4 765 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 SNX19Q92543 992 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 TIMP4Q99727 224 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 VSX1Q9NZR4 365 aaPredicted RBP4.86□□□□□ -1.63
CD44-235ENST00000532339 TCEAL9Q9UHQ7 104 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 FRMD4BQ9Y2L6 1034 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 PCDHB1Q9Y5F3 818 aa4.86□□□□□ -1.63
CD44-235ENST00000532339 LRRC3CA6NJW4 275 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 E7ENX8 843 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 FZD9O00144 591 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 AKAP10O43572 662 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 RBMXL2O75526 392 aaKnown RBP4.85□□□□□ -1.63
CD44-235ENST00000532339 SCGB1D2O95969 90 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 GRIA3P42263 894 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 RAB27AP51159 221 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 MAPK10P53779 464 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 ADKP55263 362 aaKnown RBP4.85□□□□□ -1.63
CD44-235ENST00000532339 TAP2Q03519 686 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 LRRC41Q15345 812 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 PCBP2Q15366 365 aaKnown RBP eCLIP4.85□□□□□ -1.63
CD44-235ENST00000532339 MICALCLQ6ZW33 695 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 PEG10Q86TG7 708 aaKnown RBP4.85□□□□□ -1.63
CD44-235ENST00000532339 PDPRQ8NCN5 879 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 TOR1AIP2Q8NFQ8 470 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 NSUN6Q8TEA1 469 aaKnown RBP4.85□□□□□ -1.63
CD44-235ENST00000532339 TFAP2BQ92481 460 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 LPIN2Q92539 896 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 KAT5Q92993 513 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 CHMP4CQ96CF2 233 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 SMOQ99835 787 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 IL17RBQ9NRM6 502 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 GNL3LQ9NVN8 582 aaKnown RBP4.85□□□□□ -1.63
CD44-235ENST00000532339 ASB6Q9NWX5 421 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 SIDT1Q9NXL6 827 aaKnown RBP4.85□□□□□ -1.63
CD44-235ENST00000532339 ARPP21Q9UBL0 812 aaPredicted RBP4.85□□□□□ -1.63
CD44-235ENST00000532339 SLC45A2Q9UMX9 530 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 ENTPD2Q9Y5L3 495 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 TNKSO95271 1327 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 RNF123Q5XPI4 1314 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 TRPM7Q96QT4 1865 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 EYSQ5T1H1 3165 aa4.85□□□□□ -1.63
CD44-235ENST00000532339 PAPPA2Q9BXP8 1791 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 GNAI3P08754 354 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 WT1P19544 449 aaPredicted RBP4.84□□□□□ -1.63
CD44-235ENST00000532339 GPD1P21695 349 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 CYP2C19P33261 490 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 RFC4P35249 363 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 NXPH1P58417 271 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 GNAI1P63096 354 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 MC2RQ01718 297 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 DDR1Q08345 913 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 PIN1Q13526 163 aaPredicted RBP4.84□□□□□ -1.63
CD44-235ENST00000532339 PPP2R5AQ15172 486 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 UAP1L1Q3KQV9 507 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 TAPT1Q6NXT6 567 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 TSHZ1Q6ZSZ6 1077 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 PDSS2Q86YH6 399 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 B3GALNT2Q8NCR0 500 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 NSUN7Q8NE18 718 aaKnown RBP4.84□□□□□ -1.63
CD44-235ENST00000532339 HOOK2Q96ED9 719 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 C8orf48Q96LL4 319 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 TRIB1Q96RU8 372 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 DMRTA2Q96SC8 542 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 RTFDC1Q9BY42 306 aaPredicted RBP4.84□□□□□ -1.63
CD44-235ENST00000532339 CDH19Q9H159 772 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 RLIMQ9NVW2 624 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 ZIM2Q9NZV7 527 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 UNC79Q9P2D8 2635 aa4.84□□□□□ -1.63
CD44-235ENST00000532339 RGPD5Q99666 1765 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 CHD8Q9HCK8 2581 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 SMG6Q86US8 1419 aaKnown RBP4.83□□□□□ -1.64
CD44-235ENST00000532339 TTC21AQ8NDW8 1320 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 ZNF541Q9H0D2 1346 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 PPP3CBP16298 524 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 MALP21145 153 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 SMARCA1P28370 1054 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 HUNKP57058 714 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 TBX4P57082 545 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 ITIH3Q06033 890 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 CCDC93Q567U6 631 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 RGMBQ6NW40 437 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 SLC4A10Q6U841 1118 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 USP50Q70EL3 339 aaPredicted RBP4.83□□□□□ -1.64
CD44-235ENST00000532339 TMPRSS9Q7Z410 1059 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 ZBTB46Q86UZ6 589 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 GPC2Q8N158 579 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 MYCBPAPQ8TBZ2 947 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 SCAMP4Q969E2 229 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 SARAFQ96BY9 339 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 VRK1Q99986 396 aaPredicted RBP4.83□□□□□ -1.64
CD44-235ENST00000532339 SLC13A1Q9BZW2 595 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 BRD9Q9H8M2 597 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 CPNE5Q9HCH3 593 aa4.83□□□□□ -1.64
CD44-235ENST00000532339 SERPINB13Q9UIV8 391 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms