RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	PARN	O95453	639 aa	Known RBP	6.1	□□□□□ -1.43
CD44-231	ENST00000531110	HLA-DOA	P06340	250 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	TUBB	P07437	444 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	EZR	P15311	586 aa	Known RBP	6.1	□□□□□ -1.43
CD44-231	ENST00000531110	TACR2	P21452	398 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	LPO	P22079	712 aa	Predicted RBP	6.1	□□□□□ -1.43
CD44-231	ENST00000531110	BMPR1A	P36894	532 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	PIK3CA	P42336	1068 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	IFFO1	Q0D2I5	559 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	NOG	Q13253	232 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	STIM1	Q13586	685 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	CUL3	Q13618	768 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	CUL4B	Q13620	913 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110		Q4G0T1	1027 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	COBLL1	Q53SF7	1204 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	IFIT1B	Q5T764	474 aa	Known RBP	6.1	□□□□□ -1.43
CD44-231	ENST00000531110	B3GNT9	Q6UX72	402 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	MED25	Q71SY5	747 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	SESTD1	Q86VW0	696 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	PDSS2	Q86YH6	399 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	ZFPM1	Q8IX07	1006 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	CHPF	Q8IZ52	775 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	LSMEM2	Q8N112	164 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	DIS3L	Q8TF46	1054 aa	Known RBP	6.1	□□□□□ -1.43
CD44-231	ENST00000531110	CENPT	Q96BT3	561 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	MYEOV	Q96EZ4	313 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	SMC6	Q96SB8	1091 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	MYOC	Q99972	504 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	SLC39A3	Q9BRY0	314 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	TRIM4	Q9C037	500 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	RNPEP	Q9H4A4	650 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	KLHL11	Q9NVR0	708 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	FBXO34	Q9NWN3	711 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	TBC1D7	Q9P0N9	293 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	TRAF3IP3	Q9Y228	551 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	RUVBL1	Q9Y265	456 aa	Known RBP	6.1	□□□□□ -1.43
CD44-231	ENST00000531110	ATP11B	Q9Y2G3	1177 aa		6.1	□□□□□ -1.43
CD44-231	ENST00000531110	RTL1	A6NKG5	1358 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	AATK	Q6ZMQ8	1374 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	SCGB1D2	O95969	90 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	ITGB1	P05556	798 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	CD1A	P06126	327 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	PYGL	P06737	847 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	CD53	P19397	219 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	ZNF280A	P59817	542 aa	Predicted RBP	6.09	□□□□□ -1.43
CD44-231	ENST00000531110	BIRC3	Q13489	604 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	BYSL	Q13895	437 aa	Known RBP	6.09	□□□□□ -1.43
CD44-231	ENST00000531110	LSM12	Q3MHD2	195 aa	Known RBP	6.09	□□□□□ -1.43
CD44-231	ENST00000531110	KHDC1	Q4VXA5	237 aa	Known RBP	6.09	□□□□□ -1.43
CD44-231	ENST00000531110	CEP85L	Q5SZL2	805 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	SLC4A10	Q6U841	1118 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	ATF7IP	Q6VMQ6	1270 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	LRRC55	Q6ZSA7	311 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	ZNF365	Q70YC5	407 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	EPM2AIP1	Q7L775	607 aa	Predicted RBP	6.09	□□□□□ -1.43
CD44-231	ENST00000531110	GGN	Q86UU5	652 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	TTC30A	Q86WT1	665 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	CHCHD4	Q8N4Q1	142 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	AOPEP	Q8N6M6	819 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	CEP112	Q8N8E3	955 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	OR56A1	Q8NGH5	318 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	KLHDC4	Q8TBB5	520 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	SLC35G2	Q8TBE7	412 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	HAS1	Q92839	578 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	FUBP1	Q96AE4	644 aa	Known RBP	6.09	□□□□□ -1.43
CD44-231	ENST00000531110	MED15	Q96RN5	788 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	NEU1	Q99519	415 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	CAPS2	Q9BXY5	557 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	PACSIN1	Q9BY11	444 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	TAOK3	Q9H2K8	898 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	SYNC	Q9H7C4	482 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	TRPM5	Q9NZQ8	1165 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	DKK2	Q9UBU2	259 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	MRPL11	Q9Y3B7	192 aa	Known RBP	6.09	□□□□□ -1.43
CD44-231	ENST00000531110	FPGT-TNNI3K	V9GXZ4	949 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	SHROOM2	Q13796	1616 aa		6.09	□□□□□ -1.43
CD44-231	ENST00000531110	NCOA1	Q15788	1441 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	SH3TC1	Q8TE82	1336 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	TMEM200C	A6NKL6	621 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	TSPAN6	O43657	245 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	FZD7	O75084	574 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	RPS6KA4	O75676	772 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	SLU7	O95391	586 aa	Known RBP	6.08	□□□□□ -1.44
CD44-231	ENST00000531110	FTL	P02792	175 aa	Predicted RBP	6.08	□□□□□ -1.44
CD44-231	ENST00000531110	CFI	P05156	583 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	TSPY4	P0CV99	314 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	TSPY10	P0CW01	314 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	CKB	P12277	381 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	LAG3	P18627	525 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	MAK	P20794	623 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	CD9	P21926	228 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	RNASE9	P60153	205 aa	Known RBP	6.08	□□□□□ -1.44
CD44-231	ENST00000531110	MXRA7	P84157	204 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	PPID	Q08752	370 aa	Known RBP	6.08	□□□□□ -1.44
CD44-231	ENST00000531110	IK	Q13123	557 aa	Predicted RBP	6.08	□□□□□ -1.44
CD44-231	ENST00000531110	SNAPC2	Q13487	334 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	BTG3	Q14201	252 aa	Predicted RBP	6.08	□□□□□ -1.44
CD44-231	ENST00000531110	KCTD2	Q14681	263 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	COG2	Q14746	738 aa		6.08	□□□□□ -1.44
CD44-231	ENST00000531110	BEAN1	Q3B7T3	259 aa		6.08	□□□□□ -1.44

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