RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 SCNN1AP37088 669 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 DNA2P51530 1060 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 PMF1Q6P1K2 205 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 LLGL2Q6P1M3 1020 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 RSRC2Q7L4I2 434 aaKnown RBP22.3■■□□□ 1.16
VPS28-212ENST00000530836 FUKQ8N0W3 1084 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 RASGEF1CQ8N431 466 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 BCL7CQ8WUZ0 217 aaPredicted RBP22.3■■□□□ 1.16
VPS28-212ENST00000530836 TMEM169Q96HH4 297 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 NAP1L3Q99457 506 aaPredicted RBP22.3■■□□□ 1.16
VPS28-212ENST00000530836 MARCH5Q9NX47 278 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 LZTS1Q9Y250 596 aa22.3■■□□□ 1.16
VPS28-212ENST00000530836 NPR3P17342 541 aa22.29■■□□□ 1.16
VPS28-212ENST00000530836 ACAT1P24752 427 aaKnown RBP22.29■■□□□ 1.16
VPS28-212ENST00000530836 YWHAHQ04917 246 aaPredicted RBP22.29■■□□□ 1.16
VPS28-212ENST00000530836 UBE3AQ05086 875 aa22.29■■□□□ 1.16
VPS28-212ENST00000530836 ACAP1Q15027 740 aa22.29■■□□□ 1.16
VPS28-212ENST00000530836 MDH1BQ5I0G3 518 aa22.29■■□□□ 1.16
VPS28-212ENST00000530836 CDX2Q99626 313 aaPredicted RBP22.29■■□□□ 1.16
VPS28-212ENST00000530836 MED10Q9BTT4 135 aa22.29■■□□□ 1.16
VPS28-212ENST00000530836 CRTAC1Q9NQ79 661 aa22.29■■□□□ 1.16
VPS28-212ENST00000530836 TRANK1O15050 2925 aa22.29■■□□□ 1.16
VPS28-212ENST00000530836 E5RJQ4 531 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 F8W810 466 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 PSTPIP1O43586 416 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 ATP2C2O75185 946 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 FAM200BP0CF97 657 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 PEX5P50542 639 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 RWDD2BP57060 319 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 RPL7AP62424 266 aaKnown RBP22.28■■□□□ 1.16
VPS28-212ENST00000530836 ELAVL2Q12926 359 aaKnown RBP22.28■■□□□ 1.16
VPS28-212ENST00000530836 INTS6LQ5JSJ4 861 aaKnown RBP22.28■■□□□ 1.16
VPS28-212ENST00000530836 DDX53Q86TM3 631 aaKnown RBP22.28■■□□□ 1.16
VPS28-212ENST00000530836 HASPINQ8TF76 798 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 GUCD1Q96NT3 240 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 UBXN6Q9BZV1 441 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 TRIM7Q9C029 511 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 ADAM28Q9UKQ2 775 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 GOLGA8SH3BPF8 625 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 I3L4J1 428 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 PGRMC1O00264 195 aaKnown RBP22.28■■□□□ 1.16
VPS28-212ENST00000530836 CEP104O60308 925 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 OAZ2O95190 189 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 TSPY1Q01534 308 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 PTPROQ16827 1216 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 FAM102AQ5T9C2 384 aaPredicted RBP22.28■■□□□ 1.16
VPS28-212ENST00000530836 KIAA0319Q5VV43 1072 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 OR6B2Q6IFH4 312 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 FAM171BQ6P995 826 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 RHOT1Q8IXI2 618 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 LRRN4CLQ8ND94 238 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 SPATA4Q8NEY3 305 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 POF1BQ8WVV4 589 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 KCTD13Q8WZ19 329 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 LPIN3Q9BQK8 851 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 LMAN2LQ9H0V9 348 aa22.28■■□□□ 1.16
VPS28-212ENST00000530836 PDE2AO00408 941 aaPredicted RBP22.27■■□□□ 1.16
VPS28-212ENST00000530836 EFEMP2O95967 443 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 DESP17661 470 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 POU3F3P20264 500 aaPredicted RBP22.27■■□□□ 1.16
VPS28-212ENST00000530836 DNAJB1P25685 340 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 TKTP29401 623 aaKnown RBP22.27■■□□□ 1.16
VPS28-212ENST00000530836 CAMK1Q14012 370 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 ADGRE1Q14246 886 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 LRRC38Q5VT99 294 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 ARCQ7LC44 396 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 PCED1BQ96HM7 432 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 RTP3Q9BQQ7 232 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 B3GNT5Q9BYG0 378 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 METTL5Q9NRN9 209 aaKnown RBP22.27■■□□□ 1.16
VPS28-212ENST00000530836 LMCD1Q9NZU5 365 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 TJP2Q9UDY2 1190 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 STK39Q9UEW8 545 aa22.27■■□□□ 1.16
VPS28-212ENST00000530836 MYBPHLA2RUH7 354 aa22.26■■□□□ 1.15
VPS28-212ENST00000530836 RFC1P35251 1148 aaPredicted RBP22.26■■□□□ 1.15
VPS28-212ENST00000530836 RGS7P49802 495 aa22.26■■□□□ 1.15
VPS28-212ENST00000530836 SLC6A3Q01959 620 aa22.26■■□□□ 1.15
VPS28-212ENST00000530836 SEL1L2Q5TEA6 688 aa22.26■■□□□ 1.15
VPS28-212ENST00000530836 FAM183BPQ6ZVS7 135 aa22.26■■□□□ 1.15
VPS28-212ENST00000530836 PAQR9Q6ZVX9 377 aa22.26■■□□□ 1.15
VPS28-212ENST00000530836 FAM35AQ86V20 835 aa22.26■■□□□ 1.15
VPS28-212ENST00000530836 GPR161Q8N6U8 529 aaKnown RBP22.26■■□□□ 1.15
VPS28-212ENST00000530836 ALG3Q92685 438 aa22.26■■□□□ 1.15
VPS28-212ENST00000530836 SMARCD1Q96GM5 515 aa22.26■■□□□ 1.15
VPS28-212ENST00000530836 GAS2L1Q99501 681 aaPredicted RBP22.26■■□□□ 1.15
VPS28-212ENST00000530836 VN1R3Q9BXE9 311 aa22.26■■□□□ 1.15
VPS28-212ENST00000530836 SF3B1O75533 1304 aaKnown RBP eCLIP22.26■■□□□ 1.153e-6■■■■■ 56
VPS28-212ENST00000530836 ERCC6LQ2NKX8 1250 aa22.25■■□□□ 1.15
VPS28-212ENST00000530836 TEX35Q5T0J7 233 aa22.25■■□□□ 1.15
VPS28-212ENST00000530836 CCDC70Q6NSX1 233 aa22.25■■□□□ 1.15
VPS28-212ENST00000530836 OLFML1Q6UWY5 402 aa22.25■■□□□ 1.15
VPS28-212ENST00000530836 MYLIPQ8WY64 445 aa22.25■■□□□ 1.15
VPS28-212ENST00000530836 KRT35Q92764 455 aa22.25■■□□□ 1.15
VPS28-212ENST00000530836 MRPL38Q96DV4 380 aaKnown RBP22.25■■□□□ 1.15
VPS28-212ENST00000530836 MS4A14Q96JA4 679 aa22.25■■□□□ 1.15
VPS28-212ENST00000530836 NCAPGQ9BPX3 1015 aa22.25■■□□□ 1.15
VPS28-212ENST00000530836 OXCT2Q9BYC2 517 aaPredicted RBP22.25■■□□□ 1.15
VPS28-212ENST00000530836 TSC2P49815 1807 aa22.25■■□□□ 1.15
VPS28-212ENST00000530836 MYO9BQ13459 2157 aa22.25■■□□□ 1.15
VPS28-212ENST00000530836 KIAA1671Q9BY89 1806 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms