RNA–Protein interactions for RNA: ENST00000527299.1

CLNS1A-209, Transcript of chloride nucleotide-sensitive channel 1A, humanhuman

TSL 2

Gene CLNS1A, Length 387 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLNS1A-209ENST00000527299 NOD2Q9HC29 1040 aa3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 FKBP14Q9NWM8 211 aa3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 CHPF2Q9P2E5 772 aa3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 CTNNAL1Q9UBT7 734 aa3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 STK39Q9UEW8 545 aa3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 TESQ9UGI8 421 aaKnown RBP3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 EIF2B4Q9UI10 523 aaKnown RBP3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 XPO7Q9UIA9 1087 aaKnown RBP3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 LZTS1Q9Y250 596 aa3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 EHBP1L1Q8N3D4 1523 aa3.99□□□□□ -1.77
CLNS1A-209ENST00000527299 COL3A1P02461 1466 aaPredicted RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 RPRD2Q5VT52 1461 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 IFT140Q96RY7 1462 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 MBD5Q9P267 1494 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 RAPGEF2Q9Y4G8 1499 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 TTC21BQ7Z4L5 1316 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 FHOD3Q2V2M9 1422 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 LOC101059915A0A1B0GWI6 518 aaPredicted RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 TSPAN1O60635 241 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 PFDN1O60925 122 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 N4BP1O75113 896 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 B3GALNT1O75752 331 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 ANP32DO95626 131 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 ATP6V1G2O95670 118 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 SYF2O95926 243 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 C1RP00736 705 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 CYP1A2P05177 515 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 GHRP10912 638 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 UBL4AP11441 157 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 ALADP13716 330 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 BTF3P20290 206 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 HSPA4P34932 840 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 PIK3CAP42336 1068 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 MTTPP55157 894 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 MRPS25P82663 173 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 IRF9Q00978 393 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 AKAP17AQ02040 695 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 KLC1Q07866 573 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 MSLNQ13421 630 aaPredicted RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 CUL4AQ13619 759 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 COG2Q14746 738 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 FAM214AQ32MH5 1076 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 CFAP58Q5T655 872 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 EFCAB2Q5VUJ9 269 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 SLFN12LQ6IEE8 588 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 SLC2A7Q6PXP3 512 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 ZNF365Q70YC5 407 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 OTOP1Q7RTM1 612 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 DAAM2Q86T65 1068 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 CHD1LQ86WJ1 897 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 CMTR2Q8IYT2 770 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 LINC00469Q8N7U9 141 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 KIAA1958Q8N8K9 716 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 SCAIQ8N9R8 606 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 BOLLQ8N9W6 283 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 SPERTQ8NA61 448 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 LILRB1Q8NHL6 650 aaPredicted RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 DQX1Q8TE96 717 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 ANKRD49Q8WVL7 239 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 MAML1Q92585 1016 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 KIFAP3Q92845 792 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 AZIN2Q96A70 460 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 SKA1Q96BD8 255 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 SDCCAG3Q96C92 435 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 UROC1Q96N76 676 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 HNRNPABQ99729 332 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 SH3GL2Q99962 352 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 CPPED1Q9BRF8 314 aaPredicted RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 CCDC28BQ9BUN5 200 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 CPEB1Q9BZB8 566 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 SIL1Q9H173 461 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 ALDH8A1Q9H2A2 487 aaPredicted RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 KAT14Q9H8E8 782 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 PARVBQ9HBI1 364 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 AASDHPPTQ9NRN7 309 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 INIPQ9NRY2 104 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 ZBTB40Q9NUA8 1239 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 TYW1Q9NV66 732 aaKnown RBP3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 NDUFA13Q9P0J0 144 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 SATB2Q9UPW6 733 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 LMTK2Q8IWU2 1503 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 NSD2O96028 1365 aa3.98□□□□□ -1.77
CLNS1A-209ENST00000527299 LAMC3Q9Y6N6 1575 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 GAGE12BA1L429 117 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 DPPA5A6NC42 116 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 GAGE12HA6NDE8 117 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 MYADML2A6NDP7 307 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 BECN2A8MW95 431 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 RNASET2O00584 256 aaKnown RBP3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 TEX28O15482 410 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 PRPF3O43395 683 aaKnown RBP3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 URI1O94763 535 aaPredicted RBP3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 BAG3O95817 575 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 EIF2S1P05198 315 aaKnown RBP3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 CLTAP09496 248 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 HKR1P10072 659 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 CPA3P15088 417 aa3.97□□□□□ -1.77
CLNS1A-209ENST00000527299 PORP16435 677 aaPredicted RBP3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms