RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 BBS9Q3SYG4 887 aa22.2■■□□□ 1.14
VPS28-205ENST00000526204 DLK2Q6UY11 383 aa22.2■■□□□ 1.14
VPS28-205ENST00000526204 ZBTB10Q96DT7 871 aa22.2■■□□□ 1.14
VPS28-205ENST00000526204 YY1AP1Q9H869 796 aa22.2■■□□□ 1.14
VPS28-205ENST00000526204 GRID1Q9ULK0 1009 aa22.2■■□□□ 1.14
VPS28-205ENST00000526204 TM9SF1O15321 606 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 ALADP13716 330 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 INSRRP14616 1297 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 RBP5P82980 135 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 STILQ15468 1287 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 TAF5Q15542 800 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 SEPT7Q16181 437 aaKnown RBP22.19■■□□□ 1.14
VPS28-205ENST00000526204 DARS2Q6PI48 645 aaKnown RBP22.19■■□□□ 1.14
VPS28-205ENST00000526204 LVRNQ6Q4G3 990 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 LCLAT1Q6UWP7 414 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 MAP7D3Q8IWC1 876 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 ANKRD13AQ8IZ07 590 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 LRRC37BQ96QE4 947 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 CYTH2Q99418 400 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 ADARB2Q9NS39 739 aaKnown RBP22.19■■□□□ 1.14
VPS28-205ENST00000526204 KCNH4Q9UQ05 1017 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 C2CD2Q9Y426 696 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 A0A087WZ62 844 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 SPDYE5A6NIY4 337 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 C2CD4BA6NLJ0 364 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 OSBPP22059 807 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 CDH6P55285 790 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 IGBP1P78318 339 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 NT5DC4Q86YG4 428 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 SGIP1Q9BQI5 828 aa22.19■■□□□ 1.14
VPS28-205ENST00000526204 FDXACB1Q9BRP7 624 aaPredicted RBP22.19■■□□□ 1.14
VPS28-205ENST00000526204 WDR83Q9BRX9 315 aaKnown RBP22.19■■□□□ 1.14
VPS28-205ENST00000526204 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.19■■□□□ 1.14
VPS28-205ENST00000526204 ANK1P16157 1881 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 TCRBV7S3A2A0A539 114 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 ADM5C9JUS6 153 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 PRPSAP2O60256 369 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 SPAG6O75602 509 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 PDGFRAP16234 1089 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 LAMC2Q13753 1193 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 ILDR2Q71H61 639 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 UBA3Q8TBC4 463 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 DCAKDQ8WVC6 231 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 RXFP2Q8WXD0 754 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 SPOCK2Q92563 424 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 ZNF75CPQ92670 426 aaPredicted RBP22.18■■□□□ 1.14
VPS28-205ENST00000526204 PEBP4Q96S96 227 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 SLCO1B3Q9NPD5 702 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 NDST1P52848 882 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 CBLBQ13191 982 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 PDK2Q15119 407 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 MAP1SQ66K74 1059 aaPredicted RBP22.18■■□□□ 1.14
VPS28-205ENST00000526204 LINC01465Q8N7H1 131 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 MZB1Q8WU39 189 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 RAB3IPQ96QF0 476 aaPredicted RBP22.18■■□□□ 1.14
VPS28-205ENST00000526204 NT5C1AQ9BXI3 368 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 FRMD8Q9BZ67 464 aaPredicted RBP22.18■■□□□ 1.14
VPS28-205ENST00000526204 PDGFCQ9NRA1 345 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 AKT3Q9Y243 479 aa22.18■■□□□ 1.14
VPS28-205ENST00000526204 ARF4P18085 180 aaPredicted RBP22.17■■□□□ 1.14
VPS28-205ENST00000526204 EFTUD2Q15029 972 aaKnown RBP eCLIP22.17■■□□□ 1.142e-7■■■■□ 23.3
VPS28-205ENST00000526204 OR6B2Q6IFH4 312 aa22.17■■□□□ 1.14
VPS28-205ENST00000526204 VSIG1Q86XK7 387 aa22.17■■□□□ 1.14
VPS28-205ENST00000526204 ANKLE1Q8NAG6 615 aa22.17■■□□□ 1.14
VPS28-205ENST00000526204 TRAF3IP1Q8TDR0 691 aaPredicted RBP22.17■■□□□ 1.14
VPS28-205ENST00000526204 PAPPA2Q9BXP8 1791 aa22.17■■□□□ 1.14
VPS28-205ENST00000526204 CHADO15335 359 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 LGALS2P05162 132 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 KRT16P08779 473 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 MAP2K2P36507 400 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 BOLA3Q53S33 107 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 SPDYAQ5MJ70 313 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 FYB2Q5VWT5 728 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 CYP4V2Q6ZWL3 525 aaPredicted RBP22.16■■□□□ 1.14
VPS28-205ENST00000526204 FASTKD5Q7L8L6 764 aaKnown RBP22.16■■□□□ 1.14
VPS28-205ENST00000526204 BANPQ8N9N5 519 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 ZNF398Q8TD17 642 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 CPB2Q96IY4 423 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 CLMNQ96JQ2 1002 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 ACAP3Q96P50 834 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 RNF157Q96PX1 679 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 MYLK2Q9H1R3 596 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 VPS11Q9H270 941 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 DPP3Q9NY33 737 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 IKBKGQ9Y6K9 419 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 IQANK1A0A1B0GTG1 560 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 CSDE1O75534 798 aaKnown RBP22.16■■□□□ 1.14
VPS28-205ENST00000526204 ARHGAP1Q07960 439 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 MMRN1Q13201 1228 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 PPIL2Q13356 520 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 KCNJ11Q14654 390 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 DPH6Q7L8W6 267 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 KIF2BQ8N4N8 673 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 TAB3Q8N5C8 712 aaPredicted RBP22.16■■□□□ 1.14
VPS28-205ENST00000526204 ERP27Q96DN0 273 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 ETNK1Q9HBU6 452 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 PAK5Q9P286 719 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 TSPAN16Q9UKR8 245 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 CHKBQ9Y259 395 aa22.16■■□□□ 1.14
VPS28-205ENST00000526204 COL1A2P08123 1366 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms