RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 GOLGA6L6A8MZA4 724 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 DIRC3C9JPN6 131 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 J3KTA2 159 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 HLA-DOAP06340 250 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 HGFP14210 728 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 PPIFP30405 207 aaKnown RBP8.49□□□□□ -1.05
LSM1-202ENST00000520286 AKT1P31749 480 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 MAN1A1P33908 653 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 CNR2P34972 360 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 NDUFV1P49821 464 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 PREPLQ4J6C6 727 aaPredicted RBP8.49□□□□□ -1.05
LSM1-202ENST00000520286 RINT1Q6NUQ1 792 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 SPOCD1Q6ZMY3 1216 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 CPOQ8IVL8 374 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 SLC15A3Q8IY34 581 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 ESX1Q8N693 406 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 ABHD5Q8WTS1 349 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 TMEM171Q8WVE6 324 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 HERVK_113Q902F9 699 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 TRAPPC9Q96Q05 1148 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 WASH6PQ9NQA3 447 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 SWAP70Q9UH65 585 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 EIF2B4Q9UI10 523 aaKnown RBP8.49□□□□□ -1.05
LSM1-202ENST00000520286 SPATA31A3Q5VYP0 1347 aa8.49□□□□□ -1.05
LSM1-202ENST00000520286 FER1L4A9Z1Z3 1794 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 PRAMEF33A0A0G2JMD5 474 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 TISP43B9A030 160 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 ZSCAN9O15535 394 aaPredicted RBP8.48□□□□□ -1.05
LSM1-202ENST00000520286 PRAMEF10O60809 474 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 PRKAR1BP31321 381 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 AARSP49588 968 aaKnown RBP eCLIP8.48□□□□□ -1.05
LSM1-202ENST00000520286 PGDP52209 483 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 DYRK1AQ13627 763 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 GRM4Q14833 912 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 PDCD4Q53EL6 469 aaKnown RBP8.48□□□□□ -1.05
LSM1-202ENST00000520286 SFRP4Q6FHJ7 346 aaPredicted RBP8.48□□□□□ -1.05
LSM1-202ENST00000520286 RAB11FIP2Q7L804 512 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 MAPKAPK5Q8IW41 473 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 POU5F2Q8N7G0 328 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 OR6Y1Q8NGX8 325 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 ZDHHC12Q96GR4 267 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 MAELQ96JY0 434 aaKnown RBP8.48□□□□□ -1.05
LSM1-202ENST00000520286 HIST1H2AAQ96QV6 131 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 DCLRE1CQ96SD1 692 aaKnown RBP8.48□□□□□ -1.05
LSM1-202ENST00000520286 SLC26A6Q9BXS9 759 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 ZCWPW1Q9H0M4 648 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 UNC45AQ9H3U1 944 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 VPS51Q9UID3 782 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 SLC13A4Q9UKG4 626 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 RNF114Q9Y508 228 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.48□□□□□ -1.05
LSM1-202ENST00000520286 WIZO95785 1651 aa8.48□□□□□ -1.05
LSM1-202ENST00000520286 PNMA6EA0A0J9YXQ4 647 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 F5H697 171 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 H0Y3Z8 333 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 MBD4O95243 580 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 PRKCBP05771 671 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 CENPBP07199 599 aaPredicted RBP8.47□□□□□ -1.05
LSM1-202ENST00000520286 CSF1RP07333 972 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 JUPP14923 745 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 XBP1P17861 261 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 CASP2P42575 452 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 NPTX2P47972 431 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 CCNIQ14094 377 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 BTBD16Q32M84 506 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 CD300EQ496F6 205 aaPredicted RBP8.47□□□□□ -1.05
LSM1-202ENST00000520286 CERCAMQ5T4B2 595 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 Q6ZRM9 215 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 RRAGAQ7L523 313 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 CSGALNACT1Q8TDX6 532 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 SDCCAG3Q96C92 435 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 ZBTB45Q96K62 511 aaPredicted RBP8.47□□□□□ -1.05
LSM1-202ENST00000520286 TMX4Q9H1E5 349 aaPredicted RBP8.47□□□□□ -1.05
LSM1-202ENST00000520286 DAPP1Q9UN19 280 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 TOPBP1Q92547 1522 aa8.47□□□□□ -1.05
LSM1-202ENST00000520286 A0A1W2PS29 197 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 RPS6KA4O75676 772 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 LMNAP02545 664 aaKnown RBP8.46□□□□□ -1.06
LSM1-202ENST00000520286 ELANEP08246 267 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 FAM163BP0C2L3 166 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 CD6P30203 668 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 NTSR1P30989 418 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 ZEB1P37275 1124 aaPredicted RBP8.46□□□□□ -1.06
LSM1-202ENST00000520286 MAN2A2P49641 1150 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 ACTR2P61160 394 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 MPP1Q00013 466 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 TLE2Q04725 743 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 FPGSQ05932 587 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 FOXD4Q12950 439 aaPredicted RBP8.46□□□□□ -1.06
LSM1-202ENST00000520286 HLXQ14774 488 aaPredicted RBP8.46□□□□□ -1.06
LSM1-202ENST00000520286 TBC1D10BQ4KMP7 808 aaPredicted RBP8.46□□□□□ -1.06
LSM1-202ENST00000520286 HYIQ5T013 277 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 RBM20Q5T481 1227 aaKnown RBP8.46□□□□□ -1.06
LSM1-202ENST00000520286 NFRKBQ6P4R8 1299 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 TTC30AQ86WT1 665 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 CIR1Q86X95 450 aaPredicted RBP8.46□□□□□ -1.06
LSM1-202ENST00000520286 ADGRG5Q8IZF4 528 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 MBD3L2Q8NHZ7 208 aaPredicted RBP8.46□□□□□ -1.06
LSM1-202ENST00000520286 WDR60Q8WVS4 1066 aa8.46□□□□□ -1.06
LSM1-202ENST00000520286 TEX101Q9BY14 249 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms