RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 RSAD2Q8WXG1 361 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 IRGQQ8WZA9 623 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 SYN2Q92777 582 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 EXOC4Q96A65 974 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 SCLYQ96I15 445 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 FAM193BQ96PV7 902 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 MDFIQ99750 246 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 NCAPGQ9BPX3 1015 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 MIS12Q9H081 205 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 NUCKS1Q9H1E3 243 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 ADAM7Q9H2U9 754 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 MRPL44Q9H9J2 332 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 GPRC5CQ9NQ84 441 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ANO10Q9NW15 660 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 SERTAD1Q9UHV2 236 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PCDHA5Q9Y5H7 936 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 DNMT3AQ9Y6K1 912 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 DSPP15924 2871 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 A0A1W2PQC6 194 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 SMTNL1A8MU46 457 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 RECQL4O94761 1208 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 F12P00748 615 aaPredicted RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 KRT18P05783 430 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 EPB41P11171 864 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 SLC11A1P49279 550 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 TUFMP49411 452 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 NDUFA8P51970 172 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 SNX16P57768 344 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ASIC1P78348 528 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CYP4A11Q02928 519 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 DRP2Q13474 957 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ENOX2Q16206 610 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 FUT10Q6P4F1 479 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 DYMQ7RTS9 669 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 GPR149Q86SP6 731 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ITIH5Q86UX2 942 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 METTL23Q86XA0 190 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 DDX42Q86XP3 938 aaKnown RBP eCLIP3.03□□□□□ -1.92
MCF2-208ENST00000519895 THEM5Q8N1Q8 247 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ARHGAP18Q8N392 663 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CCDC26Q8TAB7 109 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 SNIP1Q8TAD8 396 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 PARD3BQ8TEW8 1205 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 TRAPPC12Q8WVT3 735 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 BAP1Q92560 729 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 STAMQ92783 540 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 PMM1Q92871 262 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 DNASE1L2Q92874 299 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 TMEM169Q96HH4 297 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CITED4Q96RK1 184 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 TTPALQ9BTX7 342 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 MSTO1Q9BUK6 570 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 PRKD2Q9BZL6 878 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 FAM49AQ9H0Q0 323 aaPredicted RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 GOLPH3LQ9H4A5 285 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CSNK1G1Q9HCP0 422 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 SLC2A4RGQ9NR83 387 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 GDE1Q9NZC3 331 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 LIMA1Q9UHB6 759 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 FRMD4BQ9Y2L6 1034 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 VWA8A3KMH1 1905 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 SPTBN2O15020 2390 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CHD7Q9P2D1 2997 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 TET1Q8NFU7 2136 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 KIAA1549LQ6ZVL6 1849 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ITIH6Q6UXX5 1313 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 A0A1W2PQJ5 194 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 TBKBP1A7MCY6 615 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ANHXE9PGG2 379 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 PODXLO00592 558 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 NRP1O14786 923 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 GIPC1O14908 333 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 SLC16A4O15374 487 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ASS1P00966 412 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 ITGB2P05107 769 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 URODP06132 367 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 GLI1P08151 1106 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CCDC192P0DO97 292 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CDH5P33151 784 aaPredicted RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 EIF2S3P41091 472 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 CLCN4P51793 760 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ZNF135P52742 658 aaPredicted RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 BPIFB4P59827 614 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 RPL10AP62906 217 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 GRIN1Q05586 938 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CETN1Q12798 172 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CDKAL1Q5VV42 579 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ARMCX5Q6P1M9 558 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 C4orf50Q6ZRC1 276 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 ZDHHC17Q8IUH5 632 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 TRIM59Q8IWR1 403 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 TDRD5Q8NAT2 981 aaKnown RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 LNX1Q8TBB1 728 aaPredicted RBP3.03□□□□□ -1.92
MCF2-208ENST00000519895 HELQQ8TDG4 1101 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 KCTD13Q8WZ19 329 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 RELTQ969Z4 430 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 OTUB2Q96DC9 234 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 SGSM3Q96HU1 749 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 NLRP4Q96MN2 994 aa3.03□□□□□ -1.92
MCF2-208ENST00000519895 CLIC6Q96NY7 704 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms