RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 JAKMIP2Q96AA8 810 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 CHFRQ96EP1 664 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 SHDQ96IW2 340 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 GCNAQ96QF7 691 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 PRRX2Q99811 253 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 ZSWIM1Q9BR11 485 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 DUSP16Q9BY84 665 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 SMG9Q9H0W8 520 aaKnown RBP10.29□□□□□ -0.76
RNF4-221ENST00000513643 SLITRK6Q9H5Y7 841 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 BRD9Q9H8M2 597 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 KIF9Q9HAQ2 790 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 FAM49BQ9NUQ9 324 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 ARHGAP26Q9UNA1 814 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 MTF2Q9Y483 593 aaPredicted RBP10.29□□□□□ -0.76
RNF4-221ENST00000513643 KMT2EQ8IZD2 1858 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 ATP8B3O60423 1300 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 CACNA1IQ9P0X4 2223 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 FRYLO94915 3013 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 GTPBP10A4D1E9 387 aaKnown RBP10.28□□□□□ -0.76
RNF4-221ENST00000513643 OTOL1A6NHN0 477 aaPredicted RBP10.28□□□□□ -0.76
RNF4-221ENST00000513643 RNF225M0QZC1 329 aaPredicted RBP10.28□□□□□ -0.76
RNF4-221ENST00000513643 GALR2O43603 387 aaPredicted RBP10.28□□□□□ -0.76
RNF4-221ENST00000513643 AFPP02771 609 aaKnown RBP10.28□□□□□ -0.76
RNF4-221ENST00000513643 USP17L7P0C7H9 530 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 FAM200BP0CF97 657 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 CCDC192P0DO97 292 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 TBXAS1P24557 533 aaPredicted RBP10.28□□□□□ -0.76
RNF4-221ENST00000513643 YWHAQP27348 245 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 AVPR1AP37288 418 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 KIF11P52732 1056 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 ZNF132P52740 706 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 PLCB2Q00722 1185 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 USP4Q13107 963 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 RAB41Q5JT25 222 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 GPRIN1Q7Z2K8 1008 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 CCDC105Q8IYK2 499 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 ZNF276Q8N554 614 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 ARL14EPQ8N8R7 260 aaPredicted RBP10.28□□□□□ -0.76
RNF4-221ENST00000513643 ANKRD52Q8NB46 1076 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 PDZD8Q8NEN9 1154 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 PJA1Q8NG27 643 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 KAT5Q92993 513 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 MSANTD3Q96H12 275 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 ZFRQ96KR1 1074 aaKnown RBP10.28□□□□□ -0.76
RNF4-221ENST00000513643 KREMEN1Q96MU8 473 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 NELL2Q99435 816 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 THAP9Q9H5L6 903 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 LTB4R2Q9NPC1 389 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 HPS4Q9NQG7 708 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 HEBP1Q9NRV9 189 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 KRT82Q9NSB4 513 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 TRPM5Q9NZQ8 1165 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 KIAA1257Q9ULG3 409 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 SCML2Q9UQR0 700 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 HCN4Q9Y3Q4 1203 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.28□□□□□ -0.76
RNF4-221ENST00000513643 ANAPC1Q9H1A4 1944 aa10.28□□□□□ -0.76
RNF4-221ENST00000513643 ZFHX2Q9C0A1 2572 aaPredicted RBP10.28□□□□□ -0.76
RNF4-221ENST00000513643 RIF1Q5UIP0 2472 aaKnown RBP10.28□□□□□ -0.76
RNF4-221ENST00000513643 OBSL1O75147 1896 aa10.27□□□□□ -0.76
RNF4-221ENST00000513643 NUP210Q8TEM1 1887 aaPredicted RBP10.27□□□□□ -0.76
RNF4-221ENST00000513643 KIF26AQ9ULI4 1882 aaPredicted RBP10.27□□□□□ -0.76
RNF4-221ENST00000513643 ZNF638Q14966 1978 aaKnown RBP10.27□□□□□ -0.77
RNF4-221ENST00000513643 TRAV19A0A0A6YYK7 116 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 MAN2B1O00754 1011 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 GREM1O60565 184 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 PAEPP09466 180 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 HDCP19113 662 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 TARSP26639 723 aaKnown RBP10.27□□□□□ -0.77
RNF4-221ENST00000513643 RPS9P46781 194 aaKnown RBP10.27□□□□□ -0.77
RNF4-221ENST00000513643 PDE6CP51160 858 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 MAP3K7CLP57077 242 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 ZNF394Q53GI3 561 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 MIIPQ5JXC2 388 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 ZNF852Q6ZMS4 543 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 TTC30AQ86WT1 665 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 ARHGEF19Q8IW93 802 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 DTWD2Q8NBA8 298 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 FLCNQ8NFG4 579 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 ENOX1Q8TC92 643 aaKnown RBP10.27□□□□□ -0.77
RNF4-221ENST00000513643 TFAP2BQ92481 460 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 CNOT6LQ96LI5 555 aaKnown RBP10.27□□□□□ -0.77
RNF4-221ENST00000513643 HEXIM2Q96MH2 286 aaKnown RBP10.27□□□□□ -0.77
RNF4-221ENST00000513643 NT5C1BQ96P26 610 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 SLITRK1Q96PX8 696 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 MED10Q9BTT4 135 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 FOXQ1Q9C009 403 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 MFSD1Q9H3U5 465 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 FBXO44Q9H4M3 255 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 GKN1Q9NS71 199 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 OSER1Q9NX31 292 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 CHORDC1Q9UHD1 332 aaPredicted RBP10.27□□□□□ -0.77
RNF4-221ENST00000513643 SIT1Q9Y3P8 196 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 COL4A3Q01955 1670 aa10.27□□□□□ -0.77
RNF4-221ENST00000513643 FAM170BA6NMN3 283 aa10.26□□□□□ -0.77
RNF4-221ENST00000513643 O00370 1275 aa10.26□□□□□ -0.77
RNF4-221ENST00000513643 DPYSL4O14531 572 aa10.26□□□□□ -0.77
RNF4-221ENST00000513643 COCHO43405 550 aa10.26□□□□□ -0.77
RNF4-221ENST00000513643 GABBR2O75899 941 aa10.26□□□□□ -0.77
RNF4-221ENST00000513643 VDRP11473 427 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms