RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 APOBEC2Q9Y235 224 aaKnown RBP11.72□□□□□ -0.53
DDX41-216ENST00000513562 CPQQ9Y646 472 aa11.72□□□□□ -0.53
DDX41-216ENST00000513562 BPTFQ12830 3046 aa11.72□□□□□ -0.53
DDX41-216ENST00000513562 OBSL1O75147 1896 aa11.72□□□□□ -0.53
DDX41-216ENST00000513562 HELZ2Q9BYK8 2649 aaKnown RBP11.72□□□□□ -0.53
DDX41-216ENST00000513562 ATG2BQ96BY7 2078 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 A0A1W2PQF6 199 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 ZNF840PA6NDX5 716 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 GABRDO14764 452 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 SCAMP3O14828 347 aaKnown RBP11.71□□□□□ -0.53
DDX41-216ENST00000513562 HCRTO43612 131 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 TRAK2O60296 914 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 ZNF217O75362 1048 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 FAM13AO94988 1023 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 IL18RAPO95256 599 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 PCSK1P29120 753 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 LHX1P48742 406 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 USP46P62068 366 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 PLEKHG6Q3KR16 790 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 SLFN12LQ6IEE8 588 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 FAM171BQ6P995 826 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 SLCO6A1Q86UG4 719 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 ETFBKMTQ8IXQ9 262 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 LRRC52Q8N7C0 313 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 C1orf127Q8N9H9 656 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 TRIML1Q8N9V2 468 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 CXorf38Q8TB03 319 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 CDK5RAP3Q96JB5 506 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 TTLL2Q9BWV7 592 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 RNF38Q9H0F5 515 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 FAM124BQ9H5Z6 455 aaPredicted RBP11.71□□□□□ -0.53
DDX41-216ENST00000513562 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.71□□□□□ -0.53
DDX41-216ENST00000513562 SMPD4Q9NXE4 827 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 GDAP2Q9NXN4 497 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 KIAA1522Q9P206 1035 aaPredicted RBP11.71□□□□□ -0.53
DDX41-216ENST00000513562 SUSD2Q9UGT4 822 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 PCOLCE2Q9UKZ9 415 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 AGAP1Q9UPQ3 857 aa11.71□□□□□ -0.53
DDX41-216ENST00000513562 A0A087WV48 116 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 KALRNO60229 2985 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 DKK1O94907 266 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 OAS1P00973 400 aaKnown RBP11.7□□□□□ -0.54
DDX41-216ENST00000513562 ITGB3P05106 788 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 HOXB2P14652 356 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 NEK4P51957 841 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 WNT7BP56706 349 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 GRIK2Q13002 908 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 VSTM1Q6UX27 236 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 C4orf50Q6ZRC1 276 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 DENND5BQ6ZUT9 1274 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 TMPRSS7Q7RTY8 843 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 GPBP1Q86WP2 473 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 ADGRF2Q8IZF7 708 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 TOP6BLQ8N6T0 577 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 ZNF513Q8N8E2 541 aaPredicted RBP11.7□□□□□ -0.54
DDX41-216ENST00000513562 MYLPFQ96A32 169 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 ZNF419Q96HQ0 510 aaPredicted RBP11.7□□□□□ -0.54
DDX41-216ENST00000513562 LLPHQ9BRT6 129 aaKnown RBP11.7□□□□□ -0.54
DDX41-216ENST00000513562 ZDHHC5Q9C0B5 715 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 ST6GALNAC4Q9H4F1 302 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 CD248Q9HCU0 757 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 CFAP97Q9P2B7 532 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 HCN2Q9UL51 889 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 SNX9Q9Y5X1 595 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 PTPRDP23468 1912 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 DENND4CQ5VZ89 1909 aa11.7□□□□□ -0.54
DDX41-216ENST00000513562 TBC1D3BA6NDS4 549 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 HOXC11O43248 304 aaPredicted RBP11.69□□□□□ -0.54
DDX41-216ENST00000513562 GNSP15586 552 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 NDUFV2P19404 249 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 ADSSP30520 456 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 NTSR1P30989 418 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 PPP3CCP48454 512 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 NOP14P78316 857 aaKnown RBP11.69□□□□□ -0.54
DDX41-216ENST00000513562 HMGN5P82970 282 aaKnown RBP11.69□□□□□ -0.54
DDX41-216ENST00000513562 TFAMQ00059 246 aaKnown RBP11.69□□□□□ -0.54
DDX41-216ENST00000513562 GAD2Q05329 585 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 SOWAHAQ2M3V2 549 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 PREPLQ4J6C6 727 aaPredicted RBP11.69□□□□□ -0.54
DDX41-216ENST00000513562 LY6G5CQ5SRR4 150 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 SYCP2LQ5T4T6 812 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 SCARA3Q6AZY7 606 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 DDX42Q86XP3 938 aaKnown RBP eCLIP11.69□□□□□ -0.54
DDX41-216ENST00000513562 MIB1Q86YT6 1006 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 CCDC83Q8IWF9 413 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 TERB1Q8NA31 727 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 BAHD1Q8TBE0 780 aaPredicted RBP11.69□□□□□ -0.54
DDX41-216ENST00000513562 CRELD1Q96HD1 420 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 UBL7Q96S82 380 aaPredicted RBP11.69□□□□□ -0.54
DDX41-216ENST00000513562 IKZF4Q9H2S9 585 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 TOR4AQ9NXH8 423 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 EHD2Q9NZN4 543 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 TBC1D14Q9P2M4 693 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 MAGEC2Q9UBF1 373 aaPredicted RBP11.69□□□□□ -0.54
DDX41-216ENST00000513562 CYP8B1Q9UNU6 501 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 STARD13Q9Y3M8 1113 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 PCNX2A6NKB5 2137 aa11.69□□□□□ -0.54
DDX41-216ENST00000513562 PLXND1Q9Y4D7 1925 aa11.68□□□□□ -0.54
DDX41-216ENST00000513562 E2F8A0AVK6 867 aa11.68□□□□□ -0.54
DDX41-216ENST00000513562 VWA3AA6NCI4 1184 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms