RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 PMLP29590 882 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 TSPY1Q01534 308 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 PDAP1Q13442 181 aaKnown RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 GIT2Q14161 759 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 SNRNP35Q16560 246 aaKnown RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 EPC2Q52LR7 807 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 SLC26A11Q86WA9 606 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 RASGEF1CQ8N431 466 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 AGBL1Q96MI9 1066 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 MCEEQ96PE7 176 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 EFCAB1Q9HAE3 211 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 BLOC1S4Q9NUP1 217 aa11.67□□□□□ -0.54
TCOF1-211ENST00000513346 KLHL8Q9P2G9 620 aaPredicted RBP11.67□□□□□ -0.54
TCOF1-211ENST00000513346 TBC1D12O60347 775 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 LYNP07948 512 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ARHGDIAP52565 204 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 NCKAP1LP55160 1127 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SLC12A1Q13621 1099 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 RBM44Q6ZP01 1051 aaKnown RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 EXD1Q8NHP7 514 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SPATA18Q8TC71 538 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ACER1Q8TDN7 264 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 KRT35Q92764 455 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 RMND5BQ96G75 393 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 TMEM109Q9BVC6 243 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 TIPINQ9BVW5 301 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 PARVBQ9HBI1 364 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 PLGRKTQ9HBL7 147 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 TMEM8AQ9HCN3 771 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 KCNK4Q9NYG8 393 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 CDYLQ9Y232 598 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SLC25A27O95847 323 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 RAP1GDS1P52306 607 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ACTR2P61160 394 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ACVR2BQ13705 512 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 INAQ16352 499 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ARMC3Q5W041 872 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 RIPOR1Q6ZS17 1223 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 CLVS1Q8IUQ0 354 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 DCUN1D5Q9BTE7 237 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 DENND2DQ9H6A0 471 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SH3GLB1Q9Y371 365 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SPDYE5A6NIY4 337 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 APOL1O14791 398 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SLC4A1P02730 911 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 PRKCBP05771 671 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 TPBGLP0DKB5 382 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SESN2P58004 480 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 GRIK3Q13003 919 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 DHDDSQ86SQ9 333 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SLC35C1Q96A29 364 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 TMEM143Q96AN5 459 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ZDHHC15Q96MV8 337 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 MED15Q96RN5 788 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 TMEM79Q9BSE2 394 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 TTYH3Q9C0H2 523 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 NDEL1Q9GZM8 345 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 UNC45AQ9H3U1 944 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SMARCAD1Q9H4L7 1026 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 IL17RBQ9NRM6 502 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SALL4Q9UJQ4 1053 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 POLIQ9UNA4 740 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SNX13Q9Y5W8 968 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 KPNA4O00629 521 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 CBFA2T3O75081 653 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SRP72O76094 671 aaKnown RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 CYP11B1P15538 503 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 HOXA10P31260 410 aaPredicted RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 NR1H2P55055 460 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 SMAD1Q15797 465 aaKnown RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 RWDD4Q6NW29 188 aaKnown RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ZFP1Q6P2D0 407 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ERO1BQ86YB8 467 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ZCCHC9Q8N567 271 aaKnown RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 FAM71DQ8N9W8 422 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 PCYOX1LQ8NBM8 494 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 KIF12Q96FN5 646 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ATXN7L3BQ96GX2 97 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 APOPT1Q96IL0 206 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 CNDP1Q96KN2 507 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 GANQ9H2C0 597 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 ATAD3AQ9NVI7 634 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 RRN3Q9NYV6 651 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 WDR35Q9P2L0 1181 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 AGAP1Q9UPQ3 857 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 MYRFQ9Y2G1 1151 aa11.66□□□□□ -0.54
TCOF1-211ENST00000513346 FNDC3AQ9Y2H6 1198 aaKnown RBP11.66□□□□□ -0.54
TCOF1-211ENST00000513346 GSC2O15499 205 aa11.65□□□□□ -0.54
TCOF1-211ENST00000513346 GLRA3O75311 464 aa11.65□□□□□ -0.54
TCOF1-211ENST00000513346 PROSCO94903 275 aa11.65□□□□□ -0.54
TCOF1-211ENST00000513346 C6orf222P0C671 652 aaPredicted RBP11.65□□□□□ -0.54
TCOF1-211ENST00000513346 SDC4P31431 198 aa11.65□□□□□ -0.54
TCOF1-211ENST00000513346 STIP1P31948 543 aaKnown RBP11.65□□□□□ -0.54
TCOF1-211ENST00000513346 POU5F1BQ06416 359 aa11.65□□□□□ -0.54
TCOF1-211ENST00000513346 TCHHL1Q5QJ38 904 aaPredicted RBP11.65□□□□□ -0.54
TCOF1-211ENST00000513346 AADACL2Q6P093 401 aa11.65□□□□□ -0.54
TCOF1-211ENST00000513346 TTC39CQ8N584 583 aa11.65□□□□□ -0.54
TCOF1-211ENST00000513346 ZNF570Q96NI8 536 aa11.65□□□□□ -0.54
TCOF1-211ENST00000513346 FRMD8P1Q9BZ68 369 aaPredicted RBP11.65□□□□□ -0.54
TCOF1-211ENST00000513346 RRAGCQ9HB90 399 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms