RNA–Protein interactions for RNA: ENST00000511001.2

CHFR-208, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 892 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-208	ENST00000511001	NUP93	Q8N1F7	819 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	CRYBG2	Q8N1P7	616 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	SUMF1	Q8NBK3	374 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	SH3RF2	Q8TEC5	729 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	OSCP1	Q8WVF1	389 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	EEF2KMT	Q96G04	330 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	TNIP3	Q96KP6	325 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	TIGD1	Q96MW7	591 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	GSDMA	Q96QA5	445 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	TWNK	Q96RR1	684 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	RNF38	Q9H0F5	515 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	C2orf42	Q9NWW7	574 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	ZSCAN32	Q9NX65	697 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	IL37	Q9NZH6	218 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	PCDHGA2	Q9Y5H1	932 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	PCDHA5	Q9Y5H7	936 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	CEP250	Q9BV73	2442 aa		12.8	□□□□□ -0.36
CHFR-208	ENST00000511001	TRDMT1	O14717	391 aa	Known RBP	12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	KIN	O60870	393 aa	Known RBP	12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	BEST1	O76090	585 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	CLSTN1	O94985	981 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	OAS1	P00973	400 aa	Known RBP	12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	KRT13	P13646	458 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	P4HA1	P13674	534 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	CCDC130	P13994	396 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	HOXC13	P31276	330 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	CCR3	P51677	355 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	PMS1	P54277	932 aa	Known RBP	12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	SLC7A9	P82251	487 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	INCA1	Q0VD86	236 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	PDGFRL	Q15198	375 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	TMEM196	Q5HYL7	178 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	DGKK	Q5KSL6	1271 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	ZNF658	Q5TYW1	1059 aa	Predicted RBP	12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	NAIF1	Q69YI7	327 aa	Predicted RBP	12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	FSTL4	Q6MZW2	842 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	PKN3	Q6P5Z2	889 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	UNC93A	Q86WB7	457 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	SPEM1	Q8N4L4	309 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	SCAMP5	Q8TAC9	235 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	WHAMM	Q8TF30	809 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	SEMA4D	Q92854	862 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	SMARCD1	Q96GM5	515 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	CCDC34	Q96HJ3	373 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	SMO	Q99835	787 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	MED10	Q9BTT4	135 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	MMRN2	Q9H8L6	949 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	ECT2	Q9H8V3	914 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	FBRSL1	Q9HCM7	1045 aa	Known RBP	12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	TMEM8A	Q9HCN3	771 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	RMND1	Q9NWS8	449 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	EHD2	Q9NZN4	543 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	WNT6	Q9Y6F9	365 aa		12.79	□□□□□ -0.36
CHFR-208	ENST00000511001	FAM92A	A1XBS5	289 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	GOLGA6L4	A6NEF3	574 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001		K7ESF4	209 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	CETN3	O15182	167 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	AP1G2	O75843	785 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	RTN3	O95197	1032 aa	Predicted RBP	12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	PAPSS2	O95340	614 aa	Predicted RBP	12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	YWHAQ	P27348	245 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	GJA4	P35212	333 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	ANP32A	P39687	249 aa	Known RBP	12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	CXCL12	P48061	93 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	PPP3CC	P48454	512 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	SLC5A3	P53794	718 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	IFRD2	Q12894	506 aa	Predicted RBP	12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	CC2D1A	Q6P1N0	951 aa	Predicted RBP	12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	C12orf29	Q8N999	325 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	SLC2A14	Q8TDB8	520 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	FBXO32	Q969P5	355 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	FAM126A	Q9BYI3	521 aa	Predicted RBP	12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	LINC00597	Q9H2U6	94 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	CYP3A43	Q9HB55	503 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	CSNK1G1	Q9HCP0	422 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	DMAP1	Q9NPF5	467 aa	Predicted RBP	12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	KRT82	Q9NSB4	513 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	FAM49B	Q9NUQ9	324 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	DUS2	Q9NX74	493 aa	Known RBP	12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	CPQ	Q9Y646	472 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	ATP8B3	O60423	1300 aa		12.78	□□□□□ -0.36
CHFR-208	ENST00000511001	NCOR2	Q9Y618	2525 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	TRIM49B	A6NDI0	452 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	LEFTY2	O00292	366 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	EGF	P01133	1207 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	ZDHHC11B	P0C7U3	371 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	EPB41	P11171	864 aa	Known RBP	12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	GTF2H1	P32780	548 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	IFNAR2	P48551	515 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	PGF	P49763	221 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	PDE6C	P51160	858 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	GALK1	P51570	392 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	DMWD	Q09019	674 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	GAB4	Q2WGN9	574 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	SNX30	Q5VWJ9	437 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	KRT39	Q6A163	491 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	ANKRD40	Q6AI12	368 aa		12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	ELOA2	Q8IYF1	753 aa	Predicted RBP	12.77	□□□□□ -0.37
CHFR-208	ENST00000511001	SYNPO	Q8N3V7	929 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms