RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 HOXC8P31273 242 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 ELF1P32519 619 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 PTPN7P35236 360 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 MAGEA4P43358 317 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 FLT3LGP49771 235 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 TAS2R40P59535 323 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 NCALDP61601 193 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 CDC42EP1Q00587 391 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 ZNF252P-AS1Q0IIN9 211 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 PTPN20Q4JDL3 420 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 GNASQ5JWF2 1037 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 SPDYAQ5MJ70 313 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 CXCL17Q6UXB2 119 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 DPH6Q7L8W6 267 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 GSTA5Q7RTV2 222 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 TBC1D1Q86TI0 1168 aaPredicted RBP11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 FEZF2Q8TBJ5 459 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 MGARPQ8TDB4 240 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 FBF1Q8TES7 1133 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 ATG4AQ8WYN0 398 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 KLHL29Q96CT2 875 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 ANKRD27Q96NW4 1050 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 RAB3IPQ96QF0 476 aaPredicted RBP11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 HERPUD2Q9BSE4 406 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 KATNAL1Q9BW62 490 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 FRMD8P1Q9BZ68 369 aaPredicted RBP11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 EBF2Q9HAK2 575 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 ARHGEF3Q9NR81 526 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 TXLNGQ9NUQ3 528 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 ABCF3Q9NUQ8 709 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 EURLQ9NYK6 297 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 FETUBQ9UGM5 382 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 USTQ9Y2C2 406 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 STARD13Q9Y3M8 1113 aa11.55□□□□□ -0.56
SH3RF1-203ENST00000508685 TCRBV5S1A1TA0A578 114 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 DNALI1O14645 258 aaPredicted RBP11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 PRPF4O43172 522 aaKnown RBP eCLIP11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 DUSP11O75319 330 aaKnown RBP11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 CALB1P05937 261 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 ALDH3A1P30838 453 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 CDH5P33151 784 aaPredicted RBP11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 GJC1P36383 396 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 FCGRTP55899 365 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 RBP5P82980 135 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 PRKCZQ05513 592 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 PTPN11Q06124 597 aaPredicted RBP11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 MORF4L2Q15014 288 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 SETDB1Q15047 1291 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 LRRC14Q15048 493 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 UBAP2Q5T6F2 1119 aaKnown RBP11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 DNAJC24Q6P3W2 148 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 PCGF5Q86SE9 256 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 ERICH1Q86X53 443 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 ANKRD42Q8N9B4 389 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 TMEM176AQ96HP8 235 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 RSRC1Q96IZ7 334 aaKnown RBP11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 RBM15Q96T37 977 aaKnown RBP eCLIP11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 PITPNM3Q9BZ71 974 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 ZNF518BQ9C0D4 1074 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 RNF39Q9H2S5 420 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 DDX56Q9NY93 547 aaKnown RBP11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 KLK14Q9P0G3 267 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 CEP83Q9Y592 693 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 SCN1AP35498 2009 aa11.54□□□□□ -0.56
SH3RF1-203ENST00000508685 TMEM191CA6NGB0 347 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 RASA4BC9J798 803 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 SMAPO00193 183 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 RASA4O43374 803 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 WFS1O76024 890 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 P4HA1P13674 534 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 CCNB1P14635 433 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 SSR1P43307 286 aaKnown RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 NDST1P52848 882 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 YARSP54577 528 aaKnown RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 OGDHQ02218 1023 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 NFX1Q12986 1120 aaKnown RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 SPARCL1Q14515 664 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 ZC3H12AQ5D1E8 599 aaKnown RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 PLCD3Q8N3E9 789 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 MAML1Q92585 1016 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 CPXM1Q96SM3 734 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 PLEKHA5Q9HAU0 1116 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 SSU72Q9NP77 194 aaKnown RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 KLHL11Q9NVR0 708 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 SLC24A2Q9UI40 661 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 R3HDM2Q9Y2K5 976 aaKnown RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 F8VP50 259 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 GOLGA8SH3BPF8 625 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 MED7O43513 233 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 LIASO43766 372 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 KIF1CO43896 1103 aaKnown RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 FKTNO75072 461 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 MYCNP04198 464 aaPredicted RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 SLC8A3P57103 927 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 ATP11AP98196 1134 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 INCA1Q0VD86 236 aa11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 PIGHQ14442 188 aaPredicted RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 PCBP1Q15365 356 aaKnown RBP eCLIP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 TRIP13Q15645 432 aaPredicted RBP11.53□□□□□ -0.56
SH3RF1-203ENST00000508685 ZBTB6Q15916 424 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms