RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 ATF6P18850 670 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 TNNI1P19237 187 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 GABRR2P28476 465 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 PCSK1P29120 753 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 VIPR2P41587 438 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 NOP2P46087 812 aaKnown RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 RPS9P46781 194 aaKnown RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 AP3M2P53677 418 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 RPL10AP62906 217 aaKnown RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 CLDN10P78369 228 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 CYP24A1Q07973 514 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 FCHO2Q0JRZ9 810 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 BFSP1Q12934 665 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 STK4Q13043 487 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 MAPRE1Q15691 268 aaKnown RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 TAF12Q16514 161 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 ZSCAN26Q16670 478 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 SOWAHAQ2M3V2 549 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 ZNF528Q3MIS6 628 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 CFAP221Q4G0U5 840 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 INTS6LQ5JSJ4 861 aaKnown RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 FAM171BQ6P995 826 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 VITQ6UXI7 678 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 SLC9A9Q8IVB4 645 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 ARID3BQ8IVW6 561 aaPredicted RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 C1orf210Q8IVY1 113 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 CCAR2Q8N163 923 aaKnown RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 GPR161Q8N6U8 529 aaKnown RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 NOC3LQ8WTT2 800 aaKnown RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 UBXN4Q92575 508 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 MSANTD3Q96H12 275 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 FUBP3Q96I24 572 aaKnown RBP eCLIP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 MYRFLQ96LU7 910 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 FNBP1Q96RU3 617 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 PKMYT1Q99640 499 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 SEPT5Q99719 369 aaPredicted RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 MKNK1Q9BUB5 465 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 FOXQ1Q9C009 403 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 MTMR12Q9C0I1 747 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 ATXN3LQ9H3M9 355 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 ACBD3Q9H3P7 528 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 ZNF334Q9HCZ1 680 aaPredicted RBP8.56□□□□□ -1.04
SCN1A-207ENST00000507401 SLC39A2Q9NP94 309 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 LTB4R2Q9NPC1 389 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 FHOD1Q9Y613 1164 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 TSC2P49815 1807 aa8.56□□□□□ -1.04
SCN1A-207ENST00000507401 USP34Q70CQ2 3546 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 A0A1B0GVL5 298 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 HEPACAM2A8MVW5 462 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 ARNTLO00327 626 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 PDXKO00764 312 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 CLIC2O15247 247 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 EXOC3O60645 756 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 TACC1O75410 805 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 CST3P01034 146 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-207ENST00000507401 F11P03951 625 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 DCNP07585 359 aaKnown RBP8.55□□□□□ -1.04
SCN1A-207ENST00000507401 CSH1P0DML2 217 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 CSH2P0DML3 217 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 SKILP12757 684 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 PFKFB1P16118 471 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 HMGA1P17096 107 aaKnown RBP8.55□□□□□ -1.04
SCN1A-207ENST00000507401 WARSP23381 471 aaKnown RBP8.55□□□□□ -1.04
SCN1A-207ENST00000507401 DDX6P26196 483 aaKnown RBP eCLIP8.55□□□□□ -1.04
SCN1A-207ENST00000507401 CASP1P29466 404 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 GDI1P31150 447 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 ATICP31939 592 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 MAGEA11P43364 429 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 SYKP43405 635 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 ZNF165P49910 485 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 FZD5Q13467 585 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 NR6A1Q15406 480 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 STX1AQ16623 288 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 ARHGAP29Q52LW3 1261 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 GPR158Q5T848 1215 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 LCE2CQ5TA81 110 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 SCARA3Q6AZY7 606 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 VSTM1Q6UX27 236 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 C4orf50Q6ZRC1 276 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 NELFCDQ8IXH7 590 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 TTC9BQ8N6N2 239 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 SPC24Q8NBT2 197 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 NKD2Q969F2 451 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-207ENST00000507401 TRMT2BQ96GJ1 504 aaKnown RBP8.55□□□□□ -1.04
SCN1A-207ENST00000507401 GCNAQ96QF7 691 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 CGRRF1Q99675 332 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 BPIFA3Q9BQP9 254 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 OCSTAMPQ9BR26 566 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 IER2Q9BTL4 223 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 SLC46A2Q9BY10 475 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 SLITRK6Q9H5Y7 841 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 CBX8Q9HC52 389 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 HEBP1Q9NRV9 189 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 TMLHEQ9NVH6 421 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 FAM86C1Q9NVL1 165 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 ANO10Q9NW15 660 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 DMAC2Q9NW81 257 aa8.55□□□□□ -1.04
SCN1A-207ENST00000507401 ABI2Q9NYB9 513 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-207ENST00000507401 UXTQ9UBK9 157 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-207ENST00000507401 RSPH14Q9UHP6 348 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms