RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 CYP1B1Q16678 543 aa6.91□□□□□ -1.3
SF3B1-212ENST00000496458 DGKHQ86XP1 1220 aa6.91□□□□□ -1.3
SF3B1-212ENST00000496458 ABHD11Q8NFV4 315 aa6.91□□□□□ -1.3
SF3B1-212ENST00000496458 DPF1Q92782 380 aa6.91□□□□□ -1.3
SF3B1-212ENST00000496458 GABRQQ9UN88 632 aa6.91□□□□□ -1.3
SF3B1-212ENST00000496458 LINC01548A6NM66 108 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 SMIM22K7EJ46 135 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 RAB27BO00194 218 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 CCP110O43303 1012 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 RRP9O43818 475 aaKnown RBP6.9□□□□□ -1.3
SF3B1-212ENST00000496458 PDE8BO95263 885 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 PRKCGP05129 697 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 DLDP09622 509 aaKnown RBP6.9□□□□□ -1.3
SF3B1-212ENST00000496458 IL1R1P14778 569 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 PRKAR1BP31321 381 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 BCAT1P54687 386 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 E2F1Q01094 437 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 TFF2Q03403 129 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 MID2Q9UJV3 735 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 ITGB1BP2Q9UKP3 347 aa6.9□□□□□ -1.3
SF3B1-212ENST00000496458 PCSK5Q92824 1860 aa6.9□□□□□ -1.31
SF3B1-212ENST00000496458 AP4M1O00189 453 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 TJP3O95049 919 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 PRKCBP05771 671 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 TXNP10599 105 aaKnown RBP6.89□□□□□ -1.31
SF3B1-212ENST00000496458 ACVR2AP27037 513 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 ARHGEF7Q14155 803 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 SLC29A2Q14542 456 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 TBC1D25Q3MII6 688 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 L1TD1Q5T7N2 865 aaKnown RBP6.89□□□□□ -1.31
SF3B1-212ENST00000496458 DDB2Q92466 427 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 LENG8Q96PV6 779 aaPredicted RBP6.89□□□□□ -1.31
SF3B1-212ENST00000496458 PRR25Q96S07 402 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 CHST8Q9H2A9 424 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 CHPF2Q9P2E5 772 aa6.89□□□□□ -1.31
SF3B1-212ENST00000496458 PSMD9O00233 223 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 CD3EAPO15446 510 aaKnown RBP6.88□□□□□ -1.31
SF3B1-212ENST00000496458 PIAS2O75928 621 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 NHLRC4P0CG21 123 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-212ENST00000496458 CARSP49589 748 aaKnown RBP6.88□□□□□ -1.31
SF3B1-212ENST00000496458 MTHFSP49914 203 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 SRSF4Q08170 494 aaKnown RBP6.88□□□□□ -1.31
SF3B1-212ENST00000496458 PROSER3Q2NL68 480 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 ZNF782Q6ZMW2 699 aaPredicted RBP6.88□□□□□ -1.31
SF3B1-212ENST00000496458 UNC13DQ70J99 1090 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 YAF2Q8IY57 180 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 SEMA6DQ8NFY4 1073 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 CYP2W1Q8TAV3 490 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 TTC17Q96AE7 1141 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 MSLNLQ96KJ4 702 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 TRIM5Q9C035 493 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 BTBD1Q9H0C5 482 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 DRG1Q9Y295 367 aaKnown RBP6.88□□□□□ -1.31
SF3B1-212ENST00000496458 SNX13Q9Y5W8 968 aa6.88□□□□□ -1.31
SF3B1-212ENST00000496458 CGB1A6NKQ9 187 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 EXOC3O60645 756 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 HGFP14210 728 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 FPR3P25089 353 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 EPHA3P29320 983 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 UQCRC1P31930 480 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 CPT1AP50416 773 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 SLC10A2Q12908 348 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-212ENST00000496458 FOXF2Q12947 444 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 STK3Q13188 491 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 NPY5RQ15761 445 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 PRAMEF17Q5VTA0 474 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 FCRL6Q6DN72 434 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 KIRREL2Q6UWL6 708 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 TRIM72Q6ZMU5 477 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 SRRM1Q8IYB3 904 aaKnown RBP6.87□□□□□ -1.31
SF3B1-212ENST00000496458 SMCR8Q8TEV9 937 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-212ENST00000496458 RSPRY1Q96DX4 576 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 DAZAP1Q96EP5 407 aaKnown RBP6.87□□□□□ -1.31
SF3B1-212ENST00000496458 ZBTB45Q96K62 511 aaPredicted RBP6.87□□□□□ -1.31
SF3B1-212ENST00000496458 NUP62CLQ9H1M0 184 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 DHX36Q9H2U1 1008 aaKnown RBP6.87□□□□□ -1.31
SF3B1-212ENST00000496458 USP22Q9UPT9 525 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 CORO2BQ9UQ03 480 aa6.87□□□□□ -1.31
SF3B1-212ENST00000496458 F8W8V4 182 aa6.86□□□□□ -1.31
SF3B1-212ENST00000496458 PQBP1O60828 265 aaKnown RBP6.86□□□□□ -1.31
SF3B1-212ENST00000496458 TPH1P17752 444 aa6.86□□□□□ -1.31
SF3B1-212ENST00000496458 GKP32189 559 aa6.86□□□□□ -1.31
SF3B1-212ENST00000496458 HOXA4Q00056 320 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-212ENST00000496458 GRM1Q13255 1194 aa6.86□□□□□ -1.31
SF3B1-212ENST00000496458 ZNF750Q32MQ0 723 aa6.86□□□□□ -1.31
SF3B1-212ENST00000496458 ZKSCAN2Q63HK3 967 aa6.86□□□□□ -1.31
SF3B1-212ENST00000496458 MTHFD1LQ6UB35 978 aa6.86□□□□□ -1.31
SF3B1-212ENST00000496458 SIRT6Q8N6T7 355 aa6.86□□□□□ -1.31
SF3B1-212ENST00000496458 SNX22Q96L94 193 aa6.86□□□□□ -1.31
SF3B1-212ENST00000496458 THAP7Q9BT49 309 aaPredicted RBP6.86□□□□□ -1.31
SF3B1-212ENST00000496458 VN1R3Q9BXE9 311 aa6.86□□□□□ -1.31
SF3B1-212ENST00000496458 DDX21Q9NR30 783 aaKnown RBP eCLIP6.86□□□□□ -1.31
SF3B1-212ENST00000496458 TISP43B9A030 160 aa6.85□□□□□ -1.31
SF3B1-212ENST00000496458 CES2O00748 559 aa6.85□□□□□ -1.31
SF3B1-212ENST00000496458 MT-ND5P03915 603 aa6.85□□□□□ -1.31
SF3B1-212ENST00000496458 RPL17P18621 184 aaKnown RBP6.85□□□□□ -1.31
SF3B1-212ENST00000496458 IL1R2P27930 398 aa6.85□□□□□ -1.31
SF3B1-212ENST00000496458 SUMO2P61956 95 aaKnown RBP6.85□□□□□ -1.31
SF3B1-212ENST00000496458 KRT78Q8N1N4 520 aa6.85□□□□□ -1.31
SF3B1-212ENST00000496458 TERB1Q8NA31 727 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms